BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900676

Length=255
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G28970.1 | Symbols:  | Leucine-rich repeat protein kinase fa...   257    3e-68


> AT2G28970.1 | Symbols:  | Leucine-rich repeat protein kinase 
family protein | chr2:12443919-12448163 FORWARD LENGTH=2361
Length=2361

 Score =  257 bits (139),  Expect = 3e-68
 Identities = 165/178 (93%), Gaps = 0/178 (0%)
 Strand=Plus/Plus

Query  1     ATGACCAATAACTTTCAAAGAATTCTTGGTGAAGGAGGGTTTGGAGTCGTTTATCACGGT  60
             ||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||||| |||
Sbjct  1429  ATGACAAATAACTTTCAGAGAGTTCTTGGTGAAGGAGGCTTTGGAGTCGTTTATCATGGT  1488

Query  61    TGTGTTAATGATACACAACAAGTAGCTGTTAAATTGCTCTCTCAATCATCATCTCAAGGC  120
             |||||||||| ||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  1489  TGTGTTAATGGTACCCAACAAGTAGCTGTTAAATTGCTCTCTCAATCATCTTCCCAAGGC  1548

Query  121   TATAAACATTTCAAGGCTGAGGTGGAACTGCTTATGAGGGTACACCATATAAATTTGG  178
             ||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||
Sbjct  1549  TATAAACATTTCAAGGCAGAGGTGGAACTTCTTATGAGAGTACACCATAAAAATTTGG  1606



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 11611850019


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5