BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900682
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29070.2 | Symbols: | Ubiquitin fusion degradation UFD1 fam... 1498 0.0
> AT2G29070.2 | Symbols: | Ubiquitin fusion degradation UFD1 family
protein | chr2:12487274-12489518 FORWARD LENGTH=1231
Length=1231
Score = 1498 bits (811), Expect = 0.0
Identities = 900/943 (95%), Gaps = 5/943 (1%)
Strand=Plus/Plus
Query 1 ATGAATGGAGATGGTTCTAGCTTCGAGCAGTGTTACCGTTGTTACCCAGTCACATTCATT 60
||| ||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 110 ATGGATGGAGATGGTTCTAGCTTTGAGCAGTGTTACCGTTGTTATCCTGTCACATTCATT 169
Query 61 GACAAGGCACATCTTGAGAAGGGTGACAAAATTATCATGCCTCCTTCCGCTCTCGATCGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 170 GACAAGGCACATCTTGAGAAGGGTGACAAAATTATCATGCCTCCTTCCGCTCTCGATCGT 229
Query 121 CTTGCTTCTTTGCATATTGAATACCCAATGTTGTTTCAACTGAGTAATGTTTCTGTTGAG 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 230 CTTGCTTCTTTGCATATTGAATACCCAATGCTGTTTCAACTGAGTAATGTTTCTGTTGAG 289
Query 181 AAGACCTCACATTGCGGTGTACTGGAATTCACTGCAGACGAAGGCCTAGTTTACCTGCCG 240
|||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 290 AAGACCTCACATTGTGGTGTACTAGAATTCACTGCAGACGAAGGCCTAGTTTACTTGCCA 349
Query 241 TATTGGATGATGCAAAACATGTCTCTTCAAGAAGGAGACGTTATGCAAGTGAAGAATATC 300
||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||
Sbjct 350 TATTGGATGATGCAAAACATGTCTCTTGAAGAGGGAGACGTTATGCAAGTTAAGAATATC 409
Query 301 AGCTTGGTAAAAGGGACTTACATCAAGCTGCAGCCTCACACTCAAGATTTCTTGGACATT 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 410 AGCTTGGTAAAAGGGACTTACATCAAGCTGCAGCCTCACACTCAAGATTTCTTGGATATT 469
Query 361 TCTAACCCAAAAGCCATCTTGGAGACTACGCTTAGGAGCTACTCTTGCTTAACCACGGGT 420
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 470 TCCAACCCAAAAGCCATCTTGGAGACTACGCTTAGGAGTTACTCTTGCTTAACCACGGGT 529
Query 421 GATACAATTATGGTTCCGTATAACAACAAGCAATATTACATCAATGTGGTTGAGGCAAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 GATACAATTATGGTTCCGTATAACAACAAGCAATATTACATCAATGTGGTTGAGGCAAAA 589
Query 481 CCTTCTTCAGCTGTGAGTATTATTGAAACGGATTGTGAAGTTGATTTTGCTCCTCCTCTT 540
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 590 CCTTCTTCAGCTGTGAGTATTATCGAAACGGATTGTGAGGTTGATTTTGCTCCTCCTCTT 649
Query 541 GATTACAAAGAACCTGAGAAGCCACAGAAGTTGACTCCCTCAAACAAACGACCTCTCGAA 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 650 GATTACAAAGAACCTGAGAAGCCACAGAAGTTGACTCCTTCAAACAAACGACCTCTCCAA 709
Query 601 GTTAAAGAAGAAGAAGAACCTGCAAGCAAAGTTCCCAAATTCACGCCATTCACTGGATCA 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 710 GTTAAAGAAGAAGAAGAACCTGCAAGCAAAGTTCCCAAATTCACGCCGTTCACTGGATCA 769
Query 661 GGAAAACGTTTAGATGGAAAAGCACAAACACAAACTGAACCAGAAGATACAAAACAGCAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 GGAAAACGTTTAGATGGAAAAGCACAAACACAAACTGAACCAGAAGATACAAAACAGCAA 829
Query 721 GAAAAGCCAACCGAAAATGGGAAATACGATGAGAAGCTGTCAGTTACCACACCACGGCAA 780
|||||||| || || ||||||||| ||||||||||| ||||||| || |||||| |||||
Sbjct 830 GAAAAGCCGACTGAGAATGGGAAAGACGATGAGAAGTTGTCAGTCACTACACCAAGGCAA 889
Query 781 AGATCAGGAAAGCTTGTCTTTGGTTCAAACAGCAAACCATTAGCTGCAAAAGAAACAGTG 840
| |||||||||||| ||||||||||||||||||||| || |||||||||||||||| |
Sbjct 890 ATATCAGGAAAGCTCGTCTTTGGTTCAAACAGCAAATCA---GCTGCAAAAGAAACAGCG 946
Query 841 AAAGTAGTTGCTCCAAAGAACATCGAGCAAGAGAGTTCAACAAAATCCGATGAAGCTAAG 900
||||| | || |||||||||||| | ||||||||| ||||||||||||||||||||||||
Sbjct 947 AAAGTTGATGATCCAAAGAACATTGTGCAAGAGAGCTCAACAAAATCCGATGAAGCTAAG 1006
Query 901 TTTCAA-GTGTTCACAGGGAAGAAATACTCACTCAATGGTTAA 942
|| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 1007 TT-CAAAGTGTTCACAGGGAAGAAATACTCACTCAATGGTTAA 1048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5