BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900701
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29380.1 | Symbols: HAI3 | highly ABA-induced PP2C gene 3 | ... 1236 0.0
AT1G07430.1 | Symbols: HAI2 | highly ABA-induced PP2C gene 2 | ... 148 9e-35
> AT2G29380.1 | Symbols: HAI3 | highly ABA-induced PP2C gene 3
| chr2:12608702-12610167 FORWARD LENGTH=1285
Length=1285
Score = 1236 bits (669), Expect = 0.0
Identities = 818/890 (92%), Gaps = 10/890 (1%)
Strand=Plus/Plus
Query 261 TCCAAGATACGGTGTATCTTCTGTTTGCGGTAGAAGAAGAGAAATGGAAGATGCGGTGGC 320
||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 378 TCCAAGATACGGTGTTTCTTCGGTGTGCGGTAGAAGAAGAGAGATGGAAGATGCGGTGGC 437
Query 321 GATTCATCCTTCGTTTTCTTCTCGGAAGAACTCGGAGTATCCTCAACACTACTTTGGTGT 380
||||||||||| |||||||||| |||||| ||||| | |||||||||||||||||||||
Sbjct 438 AATTCATCCTTCATTTTCTTCTCCGAAGAATTCGGAATTTCCTCAACACTACTTTGGTGT 497
Query 381 GTACGACGGTCATGGTTGTTCCCACGTTGCAGCAAGGTGTAGAGAGAGGCTTCACAAGCT 440
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 GTATGACGGCCATGGTTGTTCCCACGTTGCAGCAAGGTGTAGAGAGAGGCTTCACAAGCT 557
Query 441 GGTGCAAGAAGAACTAAGCTCAGACGGGGAAGAGGAAGAAGAATGGAAAACGACTATGGA 500
|||||||||||||||||| ||||| |||||| |||||||||||||||||||| |||||
Sbjct 558 GGTGCAAGAAGAACTAAGTTCAGATATGGAAGATGAAGAAGAATGGAAAACGACGATGGA 617
Query 501 GCGTAGCTTTACGCGCATGGATAAGGAAGTTGTGTCGTGGGGTGAATCCGTCGTGAGTGC 560
||||||||| || |||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct 618 GCGTAGCTTCACACGCATGGATAAGGAAGTTGTATCGTGGGGTGATTCCGTCGTGACTGC 677
Query 561 AAATTGCAAGTGTGATCTACAATCACCTGCTTGTGATTCCGTTGGATCAACCGCCGTTGT 620
|||||||||||||||||||||| |||| |||||||||||||| ||||||||||| |||||
Sbjct 678 AAATTGCAAGTGTGATCTACAAACACCGGCTTGTGATTCCGTCGGATCAACCGCTGTTGT 737
Query 621 CTCGGTCATCACGCCGGATAAGATCGTTGTCGCCAATTGCGGTGATTCTAGAGCAGTTCT 680
||| ||||| ||||| ||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 738 CTCAGTCATTACGCCAGATAAGATCGTTGTCGCCAATTGTGGCGATTCCAGAGCAGTTCT 797
Query 681 CTGCCGCAATGGAAAACCGGTCCCTTTATCAACCGATCACAAGCCTGATCGTCCAGACGA 740
|||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 798 CTGCCGCAATGGGAAACCAGTCCCTTTATCAACCGATCACAAGCCTGATCGGCCAGACGA 857
Query 741 ATTGGATCGAATCGAAGGAGCTGGTGGACGAGTCATATACTGGGACTGTCCGAGAGTTTT 800
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 858 ATTGGATCGAATCGAAGGAGCTGGTGGACGAGTCATATATTGGGACTGTCCAAGAGTTCT 917
Query 801 AGGGGTCTTAGCAATGTCACGAGCAATAGGAGACAACTATTTGAAACCTTACGTGAGTTG 860
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 918 CGGAGTCTTAGCAATGTCACGAGCAATAGGAGACAACTATTTGAAACCTTACGTGAGTTG 977
Query 861 CGAGCCGGAGGTAACCATAACGGACAGGACAGACGACGACTGTCTCATACTAGCTAGCGA 920
||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||| ||
Sbjct 978 CGAGCCGGAGGTAACCATAACGGACAGGAGAGACGATGACTGCCTCATACTAGCTAGTGA 1037
Query 921 CGGGTTATGGGATGT-GATGTCAAACGAGACTGCCTGCTCCGTAGCGCGTATGTGTCTTC 979
|| ||||||||||| | ||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 1038 TGGTTTATGGGATGTTG-TGTCAAACGAGACCGCCTGCTCTGTAGCGCGTATGTGTCTCC 1096
Query 980 GTGGTGG-GC-AGAA-ACAGGAAGGTAGTGAGGATCCGACGATCTCGGACAAGGCATGTA 1036
||||||| | |||| ||| || || |||||||||| |||| ||||||||||| ||||
Sbjct 1097 GTGGTGGTGGGAGAAGACAAGA---TAATGAGGATCCGGCGATTTCGGACAAGGCTTGTA 1153
Query 1037 CGGAAGCGTCAGTATTGCTGACGAAGCTGGCGTTGGCAAGGCACAGTAGTGACAACGTCA 1096
||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||
Sbjct 1154 CGGAAGCGTCAGTATTGCTAACAAAGCTGGCGTTGGCAAGGAACAGTAGTGACAACGTCA 1213
Query 1097 GTGTCGTAGTGATTGATCTCAGAAGAAAAGGATACGTCAA-TGGACACTA 1145
||||||| |||||||||||||||||| ||||| |||| || |||||||||
Sbjct 1214 GTGTCGTTGTGATTGATCTCAGAAGATAAGGACACGT-AAGTGGACACTA 1262
> AT1G07430.1 | Symbols: HAI2 | highly ABA-induced PP2C gene 2
| chr1:2280835-2282828 REVERSE LENGTH=1817
Length=1817
Score = 148 bits (80), Expect = 9e-35
Identities = 101/111 (91%), Gaps = 1/111 (1%)
Strand=Plus/Plus
Query 1017 GATCTCGGACAAGGCATGTACGGAAGCGTCAGTATTGCTGACGAAGCTGGCGTTGGCAAG 1076
|||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1372 GATCACGGACAAAGCATGTACGGAGGCGTCAGTATTGCTGACGAAGCTGGCGTTGGCAAA 1431
Query 1077 GCACAGTAGTGACAACGTCAGTGTCGTAGTGATTGATCTCAGAAGAA-AAG 1126
||||||||||||||||| || ||||| || |||||||||||||||| |||
Sbjct 1432 ACACAGTAGTGACAACGTAAGCGTCGTCGTTATTGATCTCAGAAGAAGAAG 1482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5