BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900722
Length=369
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29540.3 | Symbols: ATRPC14, ATRPAC14, RPC14 | RNApolymerase... 396 9e-110
> AT2G29540.3 | Symbols: ATRPC14, ATRPAC14, RPC14 | RNApolymerase
14 kDa subunit | chr2:12643242-12643944 FORWARD LENGTH=582
Length=582
Score = 396 bits (214), Expect = 9e-110
Identities = 252/270 (93%), Gaps = 4/270 (1%)
Strand=Plus/Plus
Query 102 TCCGAGAGTAACCGTGGCTGCATACACCATCCCACATCCTTCCCTTGAACAGGTCAATAT 161
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 199 TCCCAGAGTAACCGTGGCTGCATACACCATCCCACATCCTTCCCTTGAACAGGTCAATAT 258
Query 162 CCGGGTCCAGACAACAGGTGATCCGGCAAGGGAAGTTTTCAAAGATGCATGTCAAGAACT 221
|||||||||||||||||||||||| ||||| || ||||| ||||||||||||||||| ||
Sbjct 259 CCGGGTCCAGACAACAGGTGATCCAGCAAGAGAGGTTTTTAAAGATGCATGTCAAGAGCT 318
Query 222 TATGCAAATAAATAGACATGTGAGAAGTGTTTTTGATAAGGCTGTTACTGAGTATAAGGC 281
|||||||| || |||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 319 CATGCAAATGAACAGACATGTGAGAAGCGTTTTTGATAAGGCTGTTGCTGAGTATAAGGA 378
Query 282 TGCTA-AAAAGC-TAAAGGAGGAGGCTGAAGAAGAAGAGCTTAAGAGGCAGAGGGATCTA 339
|| | |||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 TGA-ACAAAAGCGTAA-GGAGGAGGCTGAAGAAGAAGAGCTTAAGAGGCAGAGGGATCTA 436
Query 340 TTTGGGTCCATGGACATTGAAAGCAACTGA 369
|||||||||||||||||||||| |||||||
Sbjct 437 TTTGGGTCCATGGACATTGAAAACAACTGA 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17342373405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5