BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900732
Length=576
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31050.1 | Symbols: | Cupredoxin superfamily protein | chr2... 658 0.0
AT2G26720.1 | Symbols: | Cupredoxin superfamily protein | chr2... 435 3e-121
> AT2G31050.1 | Symbols: | Cupredoxin superfamily protein | chr2:13212150-13212752
FORWARD LENGTH=603
Length=603
Score = 658 bits (356), Expect = 0.0
Identities = 511/580 (88%), Gaps = 33/580 (6%)
Strand=Plus/Plus
Query 6 CTTCTTTACTTCTTTGATAATTCTTGTAGTACTTTGTGGAGTTTCCATTGGAGGAACCGT 65
|||||||||||||||| | |||||||||| ||||| |||| ||||| |||||||||||||
Sbjct 24 CTTCTTTACTTCTTTGCTTATTCTTGTAGCACTTTTTGGAATTTCCGTTGGAGGAACCGT 83
Query 66 TCACAAAGTCGGTGACTCCGACGGATGGACGATAATGAGCGTCAATAATTACGACGA-AT 124
||||||||| ||||||||||||||||||||||| ||||||||| || ||||| || ||
Sbjct 84 TCACAAAGTTGGTGACTCCGACGGATGGACGATTATGAGCGTC---AACTACGA-GACAT 139
Query 125 GGTCATCTTCAAAAACTTTTCAAGTCGAAGACTCTTTGGTCTTCAAATACAACAAAGATT 184
|| ||||| ||| |||||||||||| | |||||||||||||||||||||||||||||| |
Sbjct 140 GGGCATCTACAATAACTTTTCAAGTTGGAGACTCTTTGGTCTTCAAATACAACAAAGACT 199
Query 185 TCCACGACGTCACTGAAGTCACTCACAATGATTTCAAGTTGTGTGAACCATCTAAACCGC 244
||||||||||||| ||||||||||||||||||| | || |||||||||| || |||||||
Sbjct 200 TCCACGACGTCACCGAAGTCACTCACAATGATTACGAGATGTGTGAACCGTCCAAACCGC 259
Query 245 TAACGAGATACGAGACCGGGTCTGACACCATCATTCTAACCAAACCGGGACTCCAACACT 304
|| | |||||||||||||||||||| | | ||||||||||||||||||||||||||||||
Sbjct 260 TAGCAAGATACGAGACCGGGTCTGATATCGTCATTCTAACCAAACCGGGACTCCAACACT 319
Query 305 TCATATGCGGATTTCCTGGTCACTGCGACATGGGCCAAAAGCTTCAAATCCATGTATTAC 364
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 320 TCATATGCGGATTTCCTGGTCACTGTGACATGGGACAAAAGCTTCAAATCCATGTATTAC 379
Query 365 CAGCCTCGTTGGGACCTGTCGCTGCTCCGGTTCCTAGACCTGTCCGATCACCAAGCTCTT 424
||||||| ||||||||||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 380 CAGCCTCATTGGGACCTGTCGCTGCTCCGGTTCCTGGACCCGTCCGACCACCAAGCTCTT 439
Query 425 TTTCGTCTCCTTCACCGTCTCCGTTGGCT----C-C-----A--CA-G-T--A-T-CAG- 465
||||||||||||||| ||||||||||||| | | | || | | | | |||
Sbjct 440 TTTCGTCTCCTTCACAGTCTCCGTTGGCTGAGTCACCGGTTAATCATGCTCCAGTACAGT 499
Query 466 AT--G--GG-ACCATCACCAGCTCCACTTAGCGCAGCTTCAAACTCTAATGTTTGGATTG 520
|| | || ||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 500 ATCAGATGGGACCATCACCAGCTCCACATAGTGCAGCTTCAAACTCTAATGTTTGGATTG 559
Query 521 GACTCTGCTTCATTCCTTTACTTTTACTTT--TCATCTTA 558
||||||||||| |||||||||||| |||| ||||||||
Sbjct 560 GACTCTGCTTCCTTCCTTTACTTT--CTTTGCTCATCTTA 597
> AT2G26720.1 | Symbols: | Cupredoxin superfamily protein | chr2:11384782-11385402
FORWARD LENGTH=621
Length=621
Score = 435 bits (235), Expect = 3e-121
Identities = 383/453 (85%), Gaps = 15/453 (3%)
Strand=Plus/Plus
Query 5 TCTTCTTT-ACTTCTTTGATAATTCTTGT-AGTACTTTGTGGAGTTTCCATTGGAGGAAC 62
|||| ||| ||||||||| | ||| |||| | | |||| ||||||| || ||||||||||
Sbjct 23 TCTT-TTTCACTTCTTTGCTGATTTTTGTGACT-CTTTTTGGAGTTGCCGTTGGAGGAAC 80
Query 63 CGTTCACAAAGTCGGTGACTCCG-ACGGATGGACGAT-AAT-GAGCGTCAATAATTACGA 119
||||||||||||||| || || | ||||||||||| | | ||| | | |||| ||
Sbjct 81 CGTTCACAAAGTCGGCAAC-ACGAAAGGATGGACGATGATTGGAG-G-C---GATTATGA 134
Query 120 CGAATGGTCATCTTCAAAAACTTTTCAAGTCGAAGACTCTTTGGTCTTCAAATACAACAA 179
| ||| | ||||||| | ||||||||||| |||| || |||||||| |||||||||
Sbjct 135 GGCTTGGGCTTCTTCAAGAGTTTTTCAAGTCGGAGACACTCTGGTCTTCGCATACAACAA 194
Query 180 AGATTTCCACGACGTCACTGAAGTCACTCACAATGATTTCAAGTTGTGTGAACCATCTAA 239
||||| |||||||||||| ||||||||||||||||||||| || |||||||| | |||||
Sbjct 195 AGATTACCACGACGTCACGGAAGTCACTCACAATGATTTCGAGATGTGTGAATCGTCTAA 254
Query 240 ACCGCTAACGAGATACGAGACCGGGTCTGACACCATCATTCTAACCAAACCGGGACTCCA 299
|||||||| ||||||| |||||||||||||| | |||| |||||||||||||||||||||
Sbjct 255 ACCGCTAAGGAGATACAAGACCGGGTCTGACTCAATCAGTCTAACCAAACCGGGACTCCA 314
Query 300 ACACTTCATATGCGGATTTCCTGGTCACTGCGACATGGGCCAAAAGCTTCAAATCCATGT 359
|||||||||||||||| ||||||| |||||| | | ||| ||||||||||||||||||||
Sbjct 315 ACACTTCATATGCGGAGTTCCTGGACACTGCAAGAAGGGACAAAAGCTTCAAATCCATGT 374
Query 360 ATTACCAGCCTCGTTGGGAC-CTGTCGCTGCTCCGGTTCCTAGACCTGTCCGATCACCAA 418
||||| ||||| ||||| | | ||||||| |||||||||| |||| |||||||||| ||
Sbjct 375 CTTACCGGCCTCATTGGGTCAC-GTCGCTGTTCCGGTTCCTGGACCGGTCCGATCACAAA 433
Query 419 GCTCTTTTTCGTCTCCTTCACCGTCTCCGTTGG 451
|||||| |||||||||||||||||| || ||||
Sbjct 434 GCTCTTCTTCGTCTCCTTCACCGTCCCCATTGG 466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27679014997
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5