BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900741
Length=1482
Score E
Sequences producing significant alignments: (Bits) Value
AT1G07270.1 | Symbols: | Cell division control, Cdc6 | chr1:22... 1170 0.0
AT2G29680.1 | Symbols: CDC6, ATCDC6 | cell division control 6 |... 1144 0.0
> AT1G07270.1 | Symbols: | Cell division control, Cdc6 | chr1:2229757-2232897
REVERSE LENGTH=1518
Length=1518
Score = 1170 bits (633), Expect = 0.0
Identities = 1062/1265 (84%), Gaps = 46/1265 (4%)
Strand=Plus/Plus
Query 241 TCTGTTTGTTTAGAC-CTTAAATCAAAATGGAACCCTAGAGATGATGACCAAATGAAAGC 299
|||| |||||||| | | |||||| || |||| ||||||||||| || ||||||| |||
Sbjct 277 TCTGATTGTTTAGGCAC-TAAATCTAAGTGGAGTCCTAGAGATGAAGAGCAAATGAGAGC 335
Query 300 TGTGAAGGAGGCATTGCATGTGTCTAAGGCACCGTCAACTGTTGTTTGTCGTGAGGATGA 359
|||||| ||||||||||| ||||| || ||||| ||||| || |||| |||||||| ||
Sbjct 336 TGTGAAAGAGGCATTGCACGTGTCCAAAGCACCATCAACAATTCTTTGCCGTGAGGACGA 395
Query 360 GCAGAGACGGGTTTTCGAGTTTGTGAAAGGTTGTATGGAACAG-AAGAAAGCTGGGAGTT 418
|| | ||| ||||||||||||||||||| || || || ||| || || ||||||||||
Sbjct 396 ACAAATTCGGATTTTCGAGTTTGTGAAAGGCTGCATAGATCAGCAA-AAGGCTGGGAGTT 454
Query 419 TGTATATATGTGGTTGTCCTGGAACTGGAAAGTCACTATCCATGGAGAAAGTAAG-ACAG 477
| || |||||||||||||||||||||||||| ||||| |||||||||||||| || |||
Sbjct 455 TATACATATGTGGTTGTCCTGGAACTGGAAAATCACTGTCCATGGAGAAAGT-AGTACAA 513
Query 478 CAAGCTGAAGACTGGGCAAAGCAGGCAGGTTTGCCTTGCC--CGGAAATAGTGTCTGTTA 535
|||| || || ||| ||| |||||||||||||| || ||| | | ||||||| |
Sbjct 514 CAAGTTGGTGATTGGTCAACTCAGGCAGGTTTGCC--ACCAGTGGATACATTGTCTGTGA 571
Query 536 ATTGCACATCACTGACAAAAACTACAGATATTTTCTCCAAGATACTTGGTAACAAT-GAG 594
||||||| || |||| ||||| |||||||||||| |||||| |||||| | ||| ||
Sbjct 572 ATTGCACGTCGCTGAGTAAAACAACAGATATTTTCAGCAAGATTCTTGGTGA-AATCAAG 630
Query 595 TCC-GGGAAGAAAGCTAATGGTTC-A-TCTTCACCTCTAGAACAACTTCAGAGTTTGTTT 651
|| || ||||| ||||| | | |||||||||||| |||| ||||||| |||||||
Sbjct 631 -CCTGGCAAGAATGCTAA--CACCAACTCTTCACCTCTACAACATCTTCAGAATTTGTTT 687
Query 652 TCTCAAAAGCAACAA-CAATCCAGCTCAAAG-ATGATGCTAATAATTGCAGATGAAATGG 709
|||||||| ||| || | |||||||| ||| |||||| |||||||||||||||| ||||
Sbjct 688 TCTCAAAAACAAGAATC-TTCCAGCTC-AAGAATGATGTTAATAATTGCAGATGAGATGG 745
Query 710 ATTACTTGATCACAAGAGACCGAGGTGTACTTCATGAGCTTTTTATGCTCACAACTTTGC 769
||||||| ||||||| ||||||||| || ||| |||| ||||| ||||| ||||||||||
Sbjct 746 ATTACTTAATCACAAAAGACCGAGGAGTCCTTTATGATCTTTTCATGCTTACAACTTTGC 805
Query 770 CTTTTTCAAGGTGTATACTTATAGGTGTAGCAAATGCAATAGACCTTGCAGATCGTTTCC 829
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 CATTTTCAAGGTGTATACTTATAGGTGTAGCAAATGCAATAGACCTTGCAGATCGTTTCC 865
Query 830 TTCCAAAATTGAAGTCTCTTAATTGCAAACCTTTGGTTGTCACTTTCCGTGCCTATTCTA 889
|||||||||||||||| ||||||||||||||| ||||| | || |||||||| |||||||
Sbjct 866 TTCCAAAATTGAAGTCCCTTAATTGCAAACCTATGGTTATAACATTCCGTGCTTATTCTA 925
Query 890 AGGATCAGATCCTTAGGATACTGCAGGAAAGGCTT-GTGGCACTTCCATTTGTTGCATTT 948
| |||||||||||||||||||| ||||| |||||| | || ||| ||| ||||||||||
Sbjct 926 AAGATCAGATCCTTAGGATACTACAGGAGAGGCTTAG-GGTTCTTTCATATGTTGCATTT 984
Query 949 CAGTCCAAT-GCCTTGGAAATTTGTGCAAGAAAAGTAT-CAGCTGCAACAGGAGACATGA 1006
|| |||| |||||||| | ||||| |||||||| | | || ||| |||| |||||||
Sbjct 985 CAA-CCAAAAGCCTTGGAGCTCTGTGCCAGAAAAGT-TGCTGCAGCATCAGGTGACATGA 1042
Query 1007 GAAAGGCTCTATGTGTCTGCAGGAGCGCTCTAGAAATCTTAGAAATAGAAGTTAGAGGAA 1066
||||||| |||||||||||||| || ||||| |||||||||||||||||| ||||||
Sbjct 1043 GAAAGGCACTATGTGTCTGCAGAAGTGCTCTTGAAATCTTAGAAATAGAAACAAGAGGAT 1102
Query 1067 CAA-TAGATCAAGAACCACAAGGTCC-AGCTCCAGAGGGT-CAAGTGGTGAAGATGGATC 1123
||| | | || |||| |||||||||| | ||||||| | | || ||||||| ||||||||
Sbjct 1103 CAACTGG-TCCAGAATCACAAGGTCCTA-CTCCAGATGATTCA-GTGGTGAGGATGGATC 1159
Query 1124 ATATGA-TAGCTGCATTGTCCAAGACGTTTAAATCTCCAGTAGTTGACACCATCCAGTCT 1182
||||| | |||||||| || ||||| ||||||||||| |||||||| || || ||||||
Sbjct 1160 ATATGGCT-GCTGCATTATCTAAGACTTTTAAATCTCCTGTAGTTGAGACAATTCAGTCT 1218
Query 1183 CTACCTCAACACCAACAAATCATAGTCTGTTCTGCTGCAAAGGCCTTT-AGAGGAAGCAA 1241
|| ||||||||||||||||||||| | ||| ||||||||||||| ||| ||||| |||||
Sbjct 1219 CTTCCTCAACACCAACAAATCATAATATGTGCTGCTGCAAAGGC-TTTCAGAGGGAGCAA 1277
Query 1242 AAAGGATAG-AACCATTGCAGAG-TTAAATAAGCTATA-CTTGGAAATCTGTAAATCTTC 1298
||||||| | |||| ||| |||| |||| |||| |||| || | |||||||||||||||
Sbjct 1278 AAAGGAT-GCAACCGTTGGAGAGCTTAA-TAAGTTATATCTAG-AAATCTGTAAATCTTG 1334
Query 1299 GATGATAACTCCAGCTGGAATTACTGAGTTCACTAACATGTGCACAGTGCTAAACGACCA 1358
|||||| ||||||||||||| || ||||||||||||||||| |||||||||||||| ||
Sbjct 1335 GATGATTTCTCCAGCTGGAATCACAGAGTTCACTAACATGTGTACAGTGCTAAACGATCA 1394
Query 1359 GGGGATTTTAAAACTCAGTCATGCTCG-AGACGATAAGCTAAAGAGAGTGAGCCTTAGAG 1417
|||||| |||||| || |||| ||||| || ||||||||||||||||| ||||| ||||
Sbjct 1395 GGGGATATTAAAAGTCGGTCAAGCTCGTAGG-GATAAGCTAAAGAGAGTTAGCCTGAGAG 1453
Query 1418 TAGATGAAGCAGACATCACATTTGCTCTTAAGGAAATTCGATTCTTCCGCAACTGTCTTC 1477
|||| ||| |||||||||| |||||||| |||| || ||||| |||||||||||||| |
Sbjct 1454 TAGACGAATCAGACATCACGTTTGCTCTGCAGGAGATACGATTTTTCCGCAACTGTCTAC 1513
Query 1478 TATGA 1482
| |||
Sbjct 1514 TGTGA 1518
> AT2G29680.1 | Symbols: CDC6, ATCDC6 | cell division control 6
| chr2:12689581-12692872 FORWARD LENGTH=1643
Length=1643
Score = 1144 bits (619), Expect = 0.0
Identities = 667/691 (97%), Gaps = 0/691 (0%)
Strand=Plus/Plus
Query 792 AGGTGTAGCAAATGCAATAGACCTTGCAGATCGTTTCCTTCCAAAATTGAAGTCTCTTAA 851
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 AGGTGTAGCAAATGCAATAGACCTTGCAGATCGTTTCCTTCCAAAATTGAAGTCTCTTAA 994
Query 852 TTGCAAACCTTTGGTTGTCACTTTCCGTGCCTATTCTAAGGATCAGATCCTTAGGATACT 911
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 995 TTGCAAACCTTTGGTTGTCACTTTCCGTGCCTATTCTAAAGATCAGATCCTTAGGATTCT 1054
Query 912 GCAGGAAAGGCTTGTGGCACTTCCATTTGTTGCATTTCAGTCCAATGCCTTGGAAATTTG 971
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1055 GCAGGAGAGGCTTGTGGCACTTCCATTTGTTGCATTTCAGTCCAATGCCTTGGAAATATG 1114
Query 972 TGCAAGAAAAGTATCAGCTGCAACAGGAGACATGAGAAAGGCTCTATGTGTCTGCAGGAG 1031
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1115 TGCAAGAAAAGTATCAGCTGCATCAGGAGACATGAGAAAGGCTCTATGTGTCTGCAGGAG 1174
Query 1032 CGCTCTAGAAATCTTAGAAATAGAAGTTAGAGGAACAATAGATCAAGAACCACAAGGTCC 1091
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1175 CGCTCTAGAAATCTTAGAAATAGAAGTTAGAGGATCAATAGATCAAGAACCAAAAGGTCC 1234
Query 1092 AGCTCCAGAGGGTCAAGTGGTGAAGATGGATCATATGATAGCTGCATTGTCCAAGACGTT 1151
|| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1235 AGTTCCAGAGTGTCAAGTGGTCAAGATGGATCATATGATAGCTGCATTGTCCAAGACGTT 1294
Query 1152 TAAATCTCCAGTAGTTGACACCATCCAGTCTCTACCTCAACACCAACAAATCATAGTCTG 1211
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1295 TAAATCTCCAATAGTTGACACCATCCAGTCTCTACCTCAACACCAACAAATCATAGTCTG 1354
Query 1212 TTCTGCTGCAAAGGCCTTTAGAGGAAGCAAAAAGGATAGAACCATTGCAGAGTTAAATAA 1271
||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1355 TTCTGCTGCAAAGGCTTTTCGAGGGAGCAAAAAGGATAGAACCATTGCAGAGTTAAATAA 1414
Query 1272 GCTATACTTGGAAATCTGTAAATCTTCGATGATAACTCCAGCTGGAATTACTGAGTTCAC 1331
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 GCTATACTTGGAAATCTGTAAATCTTCGATGATAACTCCAGCTGGAATTACTGAGTTCAG 1474
Query 1332 TAACATGTGCACAGTGCTAAACGACCAGGGGATTTTAAAACTCAGTCATGCTCGAGACGA 1391
||| ||||| ||||||||||| || ||||||||| ||||||| |||| ||||||||||||
Sbjct 1475 TAATATGTGTACAGTGCTAAATGATCAGGGGATTCTAAAACTTAGTCTTGCTCGAGACGA 1534
Query 1392 TAAGCTAAAGAGAGTGAGCCTTAGAGTAGATGAAGCAGACATCACATTTGCTCTTAAGGA 1451
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1535 TAAACTAAAGAGAGTGAGCCTTAGAGTAGATGAAGCAGACATCACATTTGCTCTTAAGGA 1594
Query 1452 AATTCGATTCTTCCGCAACTGTCTTCTATGA 1482
||||||||||||||||||||||||||||||
Sbjct 1595 GATTCGATTCTTCCGCAACTGTCTTCTATGA 1625
Score = 1042 bits (564), Expect = 0.0
Identities = 730/805 (91%), Gaps = 32/805 (4%)
Strand=Plus/Plus
Query 4 AGATCGGAGATTATCGGAGGTCTTAGATCCGCTGAAGTCAACACTTCTCGGAAACGGAAG 63
|||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 60 AGATCGGAGAGTATCGGAGGTGTTAGATCCGCCGAAGTCAACACTTCTCGGAAACGGAAG 119
Query 64 TTGAGATCTGATTCGGCTGCGGAAGTTGCCGGGACGACGGTGTTGCC--TG---T-GA-A 116
|||| ||| |||||||||||||| ||| | | |||| ||||||||| || | || |
Sbjct 120 TTGATATCCGATTCGGCTGCGGAGGTTTCAGCGACGGTGGTGTTGCCTGTGAATTCGATA 179
Query 117 T-T----CGATGAAATGGAAATCGCCTCGTCGATGTGCTGTTTCAAGCCCTAAGACCTCT 171
| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 TCTACACCGATGAAATGGAAATCGCCTCGTCGATGTGCTGTTTCAATCCCTAAGACCTCT 239
Query 172 GATGAGGAGATTAAGGAAGATTCTAATGGAAATTTGACAAGTCCAGTGATATCAGCTGTG 231
|||||||||||||||||||||||||||| ||| ||| | | | ||| | |||
Sbjct 240 GATGAGGAGATTAAGGAAGATTCTAATGAAAAATTG----G---A---AAATC--CAGTG 287
Query 232 AAAAACTTATCTGTTTGTTTAGACCTTAAATCAAAATGGAACCCTAGAGATGATGACCAA 291
| |||||||||||||||| |||||||||| |||||||||| ||||||||| |||
Sbjct 288 ----A--TATCTGTTTGTTTAGAGGTTAAATCAAAGTGGAACCCTAAAGATGATGAACAA 341
Query 292 ATGAAAGCTGTGAAGGAGGCATTGCATGTGTCTAAGGCACCGTCAACTGTTGTTTGTCGT 351
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 342 ATGAAAGCTGTGAAGGAGGCATTACATGTATCTAAGGCACCGTCAACTGTTGTTTGTCGT 401
Query 352 GAGGATGAGCAGAGACGGGTTTTCGAGTTTGTGAAAGGTTGTATGGAACAGAAGAAAGCT 411
||||||||||| |||||||||||||||||||| |||||||||||||| |||||||| |||
Sbjct 402 GAGGATGAGCAAAGACGGGTTTTCGAGTTTGTTAAAGGTTGTATGGAGCAGAAGAAGGCT 461
Query 412 GGGAGTTTGTATATATGTGGTTGTCCTGGAACTGGAAAGTCACTATCCATGGAGAAAGTA 471
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 462 GGTAGTTTGTATATATGTGGGTGTCCTGGAACTGGAAAGTCACTATCCATGGAGAAAGTA 521
Query 472 AGAC-AGCAAGCTGAAGACTGGGCAAAGCAGGCAGGTTTGCCTTGCCCGGAAATAGTGTC 530
|||| | ||||||||||| |||||||||||||||||||||| ||| || |||| ||||||
Sbjct 522 AGACTA-CAAGCTGAAGAATGGGCAAAGCAGGCAGGTTTGCATTGTCCTGAAACAGTGTC 580
Query 531 TGTTAATTGCACATCACTGACAAAAACTACAGATATTTTCTCCAAGATACTTGGTAACAA 590
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 581 TGTTAATTGCACATCACTGACAAAAAGTACAGATATTTTCTCCAAGATACTTGGTAACTA 640
Query 591 TGAGTCCGGGAAGAAAGCTAATGGTTCATCTTCACCTCTAGAACAACTTCAGAGTTTGTT 650
||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||
Sbjct 641 TGAGTCCGGGAAGAAAGCTAATGGTTCATTTTCACCTCTACAACAACTTCAGAGATTGTT 700
Query 651 TTCTCAAAAGCAACAACAATCCAGCTCAAAGATGATGCTAATAATTGCAGATGAAATGGA 710
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 701 TTCTCAAAAGCAACAACAATCCAGATCAAAGATGATGCTAATAATTGCAGATGAAATGGA 760
Query 711 TTACTTGATCACAAGAGACCGAGGTGTACTTCATGAGCTTTTTATGCTCACAACTTTGCC 770
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 761 TTACTTGATCACAAGAGACCGAGGTGTCCTTCATGAGCTTTTTATGCTCACAACTTTGCC 820
Query 771 TTTTTCAAGGTGTATACTTATAGGT 795
|| |||||||||||||||||||||
Sbjct 821 ATTGTCAAGGTGTATACTTATAGGT 845
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73091993520
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5