BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900750
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29770.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1197 0.0
AT2G29780.1 | Symbols: | Galactose oxidase/kelch repeat superf... 484 6e-136
AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-l... 204 2e-51
AT2G29860.1 | Symbols: | Galactose oxidase/kelch repeat superf... 148 9e-35
> AT2G29770.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:12715411-12716875 REVERSE LENGTH=1363
Length=1363
Score = 1197 bits (648), Expect = 0.0
Identities = 1011/1178 (86%), Gaps = 58/1178 (5%)
Strand=Plus/Plus
Query 1 ATGGTTTTCATCTCTGAAACTTCCGACGATGGCTCTAATGGCGGCGATCCAACCAAGAAT 60
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 3 ATGGTTTTCATCTCTGAAACTTCCGACGACGGCTCCAATGGCGGCGATCCAACCAAGAAT 62
Query 61 GCGCAACAAGAAAAAGAAGAGAATCTTCCTCCGATTCCTCAAGAAATCCCAGAAGAACTC 120
||||| ||||| |||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 63 CCGCAAGAAGAAGAAGAAGAGAATCTTCCTCCGATTCCTCAAGGAATCCCAGACGAACTC 122
Query 121 ATCGAAAGTACCGTCGCACTCGTCAGGAGTA-GTCATTACCCGTCGCTATCTCTCCTCTC 179
||||||||||||||| ||| || |||| | ||||||||||| ||||||||||||||||
Sbjct 123 ATCGAAAGTACCGTCTTACTAATCCGGAG-ATGTCATTACCCGACGCTATCTCTCCTCTC 181
Query 180 CAAAGCCTTTCGTCGCGTCATATCTTCTCCAGG-ACTCTACCACAGCCGCTTGC-TCCTC 237
|||| ||||||||||||| || |||||| | || ||||||| | |||||||| | |||||
Sbjct 182 CAAAACCTTTCGTCGCGTTATCTCTTCTTC-GGAACTCTACAAAAGCCGCTT-CATCCTC 239
Query 238 GCA-CTCACCGACCCGGTTCTTTACGCTTTGATCGG-----------AT--T----GAGA 279
| ||||||||| | ||||||||||| |||||||| || | | |
Sbjct 240 -AACCTCACCGACTCAGTTCTTTACGCCTTGATCGGATTCTCTCCTTATAATACCACAAA 298
Query 280 C-TGTACATTCTCAATCGAAACGTTCCAAGAAATATCTCTTTACGA-TTGAGCGAAATCG 337
| |||||||||||||| | ||| |||||||||| |||||||||| | ||||| ||||||
Sbjct 299 CTTGTACATTCTCAATTGTAACATTCCAAGAAACATCTCTTTAC-ACTTGAGAGAAATCA 357
Query 338 GTTCACTTCCTCCTCTGAATCATGGATCTGCTGTTGTCACCATCGGATACGATATGTATG 397
||||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||
Sbjct 358 AATCACTTCCTCCTCTGAATCATGGATCTGCGGTGGTCACAATCGGATACCATATGTATG 417
Query 398 TAATCGGTGGACACAACAACCAACATCAACCCACATCGAATGTGTTTATCATCGATTTGA 457
||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 418 TAATCGGTGGACACAACCGCCTACATCAACCCACATCGAATGTGTCTATCATCGATTTGA 477
Query 458 GATTTCATACGTGTAT-CTCTCTCCCAAGAATGAAGAG-GCGTCGCGTCAACGCAGCCGC 515
|||||||||||| | | ||| ||||| |||||| |||| | ||||||| ||||||| ||
Sbjct 478 GATTTCATACGTCT-TGCTCGCTCCCGAGAATGCAGAGAAC-TCGCGTCTACGCAGCTGC 535
Query 516 AGGAGTAATTGACGGAAGGATTCATGTGATCGGAGGTTGCGCCAAGCTAAATGATCATTG 575
|||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||
Sbjct 536 AGGAGTAATTGACGGAAGGATTTATGTGATCGGAGGTTGCGTGAAGCGAAATGATCATTG 595
Query 576 GATCGAAGTGTTCGATATAGAGAATCGGACATGGAGTACTGTGCCTGATC--C-AGACCA 632
||||||||||||||||||||||||||||| ||||||| ||||||| ||| | | ||
Sbjct 596 GATCGAAGTGTTCGATATAGAGAATCGGATTTGGAGTAGTGTGCCTCATCATCGATACTG 655
Query 633 TAACAATTCTAGTTTGAGAGGAGGAGGGTTTTTGACATGTGTGGTGATGCAAGAA-ATGA 691
|||| ||||||||||||||||| ||||||| |||||| |||||||||||| || | ||
Sbjct 656 TAACGGTTCTAGTTTGAGAGGAGAAGGGTTTGTGACATCAGTGGTGATGCAA-AACAAGA 714
Query 692 TTTACATTTTGGATACTCTGTTTGGTTTTGCTTACGAACCAAGACAAGGTTTATGGCAGT 751
|||||||||||||| ||||||||||||||||||||||||||||||| ||| || |||||
Sbjct 715 TTTACATTTTGGATTCTCTGTTTGGTTTTGCTTACGAACCAAGACACGGTACATTGCAGT 774
Query 752 CAATT-GGATTGGAAACTCAGTTGAAGTTGCATT-G-GAAAGTC-AGTTGTGTGATCGAG 807
| ||| ||||| ||||||||||| | ||| | || | | | | |||||||||| |||
Sbjct 775 C-ATTAGGATTTGAAACTCAGTTCATGTTTCTTTGGCGCGACCCGTGTTGTGTGATTGAG 833
Query 808 GATTTGCTGTATTGTATTGATCCTA---G-G-T-TGGGACAT-CAAATAGTGGTATATGA 860
| |||| |||||||||||||||||| | | | | |||||| | |||||| || |||||
Sbjct 834 GGTTTGTTGTATTGTATTGATCCTATGTGTGTTCTTGGACATGC-AATAGTTGTTTATGA 892
Query 861 TCCGAATGAGTTGGTTTGGAGACCTGTGAAGGGTGCATATGTTTTGCCTGA-TTTCTGTT 919
||||||||||||| ||||||||| ||||||||| |||||| |||||||| | ||| ||||
Sbjct 893 TCCGAATGAGTTGATTTGGAGACGTGTGAAGGGGGCATATATTTTGCCTAAGTTT-TGTT 951
Query 920 ATAATCAGTGTAAAATGGCGAATTTTGGCGGGAAGCTGGTGATTTTGGGCTCTGT-TAAA 978
|| ||||||||||||||||||||||||| |||||| ||| |||||||| | | | |||
Sbjct 952 ATTATCAGTGTAAAATGGCGAATTTTGGTGGGAAGTTGGCAATTTTGGGATGT-TCTAAT 1010
Query 979 TCCAGCCTGCATGGTTTGGAAGATGTTTGGTGTC-TAGAGATCGCGTTGGAGAAA-CGTC 1036
||||||| || ||||||| |||||||||||| || ||||||| | |||||| ||| ||||
Sbjct 1011 TCCAGCCAGCGTGGTTTGAAAGATGTTTGGT-TCGTAGAGATTGAGTTGGA-AAATCGTC 1068
Query 1037 AAGGTGGTGAGATTTGGGGGAAGGTCGATTCATTGGCGATTGTGCTTAAATCAGTGAACT 1096
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1069 AAAGTGGTGAGATTTGGGGGAAGGTCGATTCATTGGCGATTGTGCTTAGATCAGTGAAGT 1128
Query 1097 CGCCTTCCATTGATCTGCTTCGCTCTGTTACGTTTTGA 1134
||||||||||||||||| ||||||||||||||||||||
Sbjct 1129 CGCCTTCCATTGATCTGTTTCGCTCTGTTACGTTTTGA 1166
> AT2G29780.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:12717786-12719328 REVERSE LENGTH=1467
Length=1467
Score = 484 bits (262), Expect = 6e-136
Identities = 863/1137 (76%), Gaps = 105/1137 (9%)
Strand=Plus/Plus
Query 64 CAACAAGAAAAAGAAGAGAATCTTCCTCCGATTCCTCAAGAAATCCCAGAAGAACTCATC 123
||| ||||| ||| |||||||| |||||||||||||| | |||||||| ||| |||||||
Sbjct 100 CAAGAAGAAGAAGTAGAGAATCATCCTCCGATTCCTCGACAAATCCCACAAGCACTCATC 159
Query 124 GA-AAGTACCGTCGCACTCGTCAGGAGTA-GTCATTACCCGTCGCTATCTCTCCTCTCCA 181
| ||| |||||||||||| ||| ||| | |||||||||||||||||||||||||||| |
Sbjct 160 -AGAAGAACCGTCGCACTCATCAAGAG-ATGTCATTACCCGTCGCTATCTCTCCTCTCTA 217
Query 182 AAGCCTTTCGTCGCGTCATATCTTCTCCAGG-ACTCTACCACAGC-CGCTTGCTCCTCGC 239
||||||||||| ||| || ||||| || || |||| |||| | | |||| | |||
Sbjct 218 AAGCCTTTCGTATCGTAATCTCTTCGCC-GGAACTCCACCA-AACACGCTCGAGCCT-AA 274
Query 240 A-CTCACCGACCCGGTTCTTTACGCTTTGATCGGATTG-------A--G-------A-CT 281
| || ||||| |||||||||||||||||||||||||| | | | ||
Sbjct 275 ACCTAACCGAACCGGTTCTTTACGCTTTGATCGGATTCCCTCCTCATAGTTTCCCGAACT 334
Query 282 G-TACATTCTCAATCGA-AACGTTCCAAGAAATATCTCTTTACGATTGAGCGAAATCGGT 339
| | ||||||||| | | ||| || ||||||| ||| | ||||||||||||| ||||||
Sbjct 335 GGTTCATTCTCAACC-ACAACATTACAAGAAACATCCCATTACGATTGAGCGCTATCGGT 393
Query 340 TCACTTCCTCCTCTGAATCATGGATCTGCTGTTGTCACCATCGGATACGATATGTATGTA 399
|||||||||||| |||||| ||| |||||||| ||||| ||||| ||| | ||||||||
Sbjct 394 TCACTTCCTCCTATGAATCCTGGCTCTGCTGTGGTCACAATCGGCTACAAGATGTATGTG 453
Query 400 ATCGGTGGACACA-ACAACCAACATCAACCCAC-ATCGAATGTGTTTATCATCGATT-TG 456
|||||||||| | | |||| || ||||| | || ||||||| ||||||| | |
Sbjct 454 ATCGGTGGACTGATAGGGCCAA-AT-AACCCTGTAAAGACTGTGTTTGTCATCGACTGT- 510
Query 457 AGATTTCATACGTGTATCTCTCTCCCAAGAATGAAGAGGCGTCGCGTCAACG--CAGCCG 514
||| | |||||||||| || |||||||| ||| | ||| | | ||| | || ||| ||
Sbjct 511 AGAGTCCATACGTGTAACTATCTCCCAACTATGCATAGG-G-CTCGTTACCGTGCAGTCG 568
Query 515 CAGGAGTAATTGACGGAAGGATTCATGTGATCGGAGGTTGCGCCAAGCTAAATGATC-AT 573
||| |||||| |||||| |||| |||| ||||||||||||| |||| | || | ||
Sbjct 569 CAGAAGTAATCAACGGAAAGATTTATGTCATCGGAGGTTGCGAGAAGCGGTACGA-CGAT 627
Query 574 TGGATCGAAGTGTTCGATATAGAGAATCGGACAT--GGAGTACTGTGCCTGATCCAGACC 631
|||||||||||||||||| ||| || | ||| || |||||||||| ||||||| | ||
Sbjct 628 TGGATCGAAGTGTTCGATGTAGTGACT-GGA-ATTTGGAGTACTGTCCCTGATCGATCCC 685
Query 632 ATAACAAT-TCTAGTTTGAGAGGAGGAGGGTTTTTGACATGTGTGGTGATGCAAGA-AAT 689
|| || | ||||||||| ||||||||||||| |||||| ||||||||||||| | ||
Sbjct 686 ATTTCA-TGTCTAGTTTGCCAGGAGGAGGGTTTGTGACATCTGTGGTGATGCAAAACAA- 743
Query 690 GATTTACATTTTGGATACT-CTGTTTGGTTTTGCTTACGAACCAAGACAAGGTTTATGGC 748
|||||||||||||||| || | || |||||| | ||| || || | | ||| ||||
Sbjct 744 GATTTACATTTTGGATGCTAC-GTGTGGTTTGGTTTATGATCCCATTGATGGTACATGGG 802
Query 749 AGTCAATTGGA--TTGGAAACT-CAGTTGAAGT-TGCATTGG-A-AAGTCA-GTTGTGTG 801
||||| ||| |||||| || | |||||||| | | ||| | ||| | ||||||||
Sbjct 803 AGTCAGG-GGAGCTTGGAA-CTAC-GTTGAAGTCTT-ACTGGTACAAGCCGTGTTGTGTG 858
Query 802 ATCGAGGATTTGCTGTATTGTATTGATCC-TAG-GT-TG---GGA-CATCAAATAG-TGG 853
|| ||||||||| ||||| || ||||||| || || | || | || ||| ||
Sbjct 859 ATTGAGGATTTGTTGTATAGTTTTGATCCATACTGTCTTCAAGGTTC-TCCGATAAATG- 916
Query 854 TATATGATCCGAATGAGTTGGTTTGGAGACCTGTGAAGGGTGC----ATA--TG-TTTTG 906
| |||||||| |||| ||||||||| ||| ||| |||| | ||| || ||||
Sbjct 917 TGTATGATCCAAATGTCATGGTTTGGACTCCTATGATGGGTACGGGTATACGTGCTTTT- 975
Query 907 CCTGATTTCTG-TTA-TAATCAGTGTAAAATGGCGAATTTTGGCGGGAAGCTGGTGATTT 964
|||||| || | ||| | | |||||||||||||||||||||| |||||| || || |||
Sbjct 976 CCTGATCTC-GATTACTT-TGAGTGTAAAATGGCGAATTTTGGTGGGAAGTTGATGGTTT 1033
Query 965 T-GG-GCT-CTGT-TAAATCCAGCCTGCATGGTTTGGAAGATGTTTGGTGTC-TAGAGAT 1019
| || ||| || | ||| | | || | |||| | ||| |||||| | |||||||
Sbjct 1034 TTGGTGCTACT-TATAA--CAA-CC--C--GGTTAC-A-GATACTTGGTG-CATAGAGAT 1082
Query 1020 CGCGTTGGAGAAACG-TCAAGGTGGTGAGATTTGGGGGAAGGTCGATTCATTGGCGATTG 1078
|||||| | ||| | | || ||| ||||| ||||| | |||||||| ||| | ||
Sbjct 1083 GGCGTTG-ATAAAAGGTGAAACAGGTCCGATTTTGGGGATGATCGATTCAATGGTGCCTG 1141
Query 1079 TGCTTAAATCAGTGAACTCGCCTTCCATTGATCTGCT-TCGCTCTGTTACGTTTTGA 1134
|||||| ||| ||| ||||||||| ||||||||| | |||||||||||| ||||||
Sbjct 1142 TGCTTAGATCCGTGTACTCGCCTTACATTGATCTT-TGTCGCTCTGTTACATTTTGA 1197
> AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:12712884-12715852 FORWARD LENGTH=2733
Length=2733
Score = 204 bits (110), Expect = 2e-51
Identities = 134/145 (92%), Gaps = 4/145 (3%)
Strand=Plus/Minus
Query 992 GTTTGGAAGATGTTTGGTGTC-TAGAGATCGCGTTGGAGAAA-CGTCAAGGTGGTGAGAT 1049
||||| |||||||||||| || ||||||| | |||||| ||| |||||| ||||||||||
Sbjct 2733 GTTTGAAAGATGTTTGGT-TCGTAGAGATTGAGTTGGA-AAATCGTCAAAGTGGTGAGAT 2676
Query 1050 TTGGGGGAAGGTCGATTCATTGGCGATTGTGCTTAAATCAGTGAACTCGCCTTCCATTGA 1109
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 2675 TTGGGGGAAGGTCGATTCATTGGCGATTGTGCTTAGATCAGTGAAGTCGCCTTCCATTGA 2616
Query 1110 TCTGCTTCGCTCTGTTACGTTTTGA 1134
|||| ||||||||||||||||||||
Sbjct 2615 TCTGTTTCGCTCTGTTACGTTTTGA 2591
> AT2G29860.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:12737666-12738388 REVERSE LENGTH=723
Length=723
Score = 148 bits (80), Expect = 9e-35
Identities = 504/696 (72%), Gaps = 80/696 (11%)
Strand=Plus/Plus
Query 96 TCCTCAAGAAATCCCAGAAGAACTCATCGAAAGTACCGTCGCACTCGT--CAGGAGTAGT 153
|||||||||| | |||||||||||||||||||| | || |||| | | || || | ||
Sbjct 57 TCCTCAAGAACTTCCAGAAGAACTCATCGAAAGCATTGTTGCACCCATCCCAAGA-T-GT 114
Query 154 CATTACCCGTCGCTATCTCTCCTCTCCAAAGCCTTTCGTCGCGTCAT-ATCTTCTCCAG- 211
||||||||||||||||||||||||||| ||||||||||| ||| || | |||| |||
Sbjct 115 TATTACCCGTCGCTATCTCTCCTCTCCAGAGCCTTTCGTCACGTAATCA-CTTC-GCAGC 172
Query 212 GACTCTACCACAGC-CGCTTGCTCCTCGCACTCACCGACCCGGTTCTTTACGCTTTGATC 270
||||| | | | |||| | ||||| | | || ||||||||||| || || |||
Sbjct 173 AACTCT-TCGTAACTCGCTCGGGCCTCGGTTTTAAGGAACCGGTTCTTTATGCCTTCATC 231
Query 271 GGATTG-AGACTGTACA-T-TCTCAA--TCG---AAACGTTC--C-AAGAAATATCTCTT 319
||| || | || ||| | | | ||| | | | | ||| | || || ||| | |
Sbjct 232 GGA-TGCACACCGTATACTACCCCAAGGTGGTTCATTC-TTCGTCGGAGCAACATCCCAT 289
Query 320 TACGATTGAGCG-A-AATCGGTTCACTTCCTCCTCTGAATCATGGATCTGCTGTTGTCAC 377
||| ||| | || | | || ||||||||||| | || || |||| | |||||||||||
Sbjct 290 TACAATT-A-CGCAGACTCAATTCACTTCCTCATATGTTTCCTGGAGCAGCTGTTGTCAC 347
Query 378 CATCGGATACGATATGTATGTAATCGGTGGACACAACAACCAACATCAACCCACATCGAA 437
||||||||| | || || ||||| ||||| || | | |||||||| ||| |
Sbjct 348 AATCGGATACAAGATCTACGTAATGGGTGG---TTAC-A--ATTATCAACCCGTATCTAC 401
Query 438 TGTGTTTATCATCGATTTG-AGATTTCATACGT-GTATCTCTCTCCCAAGA-ATG--AAG 492
|||| |||||||||| || ||||| ||||||| | | || ||| ||| || ||| |||
Sbjct 402 TGTGATTATCATCGA-CTGCAGATTCCATACGTGGCA-CTATCT-CCAGGATATGCAAAG 458
Query 493 AGGCGTCGCGT-CAACGCAGCCGCAGGAGTAATTGACGGAAGGATTCATGTGATCGGAGG 551
| || ||| | | | ||| || | ||||||||||||||||||||| |||||||||||||
Sbjct 459 A-GC-TCG-TTACCATGCAACCCCCGGAGTAATTGACGGAAGGATTTATGTGATCGGAGG 515
Query 552 TTGCGCCAAGCTAA-ATGATCATTGGATCGAAGTGTTCGATATAGAGAATC-G-GA-CAT 607
|| || | || ||| | ||||| | |||||||| ||| | || || | | || | |
Sbjct 516 ACGCAAGAAAC-AAGATGCTGATTGGGTTGAAGTGTTTGATGT-GACAA-CTGAGAGC-T 571
Query 608 -GGAGTACTGTGCCTGA-TCCA-GACCATAACAATTCTAGTTTGAGAGGA-GGAGGGTTT 663
||| ||||||||| | || | | || |||| | |||| ||||| | ||| ||||
Sbjct 572 GGGA-AACTGTGCCT-ACTCAATG-CCCTAACGAGGCTAG--TGAGA--ATGGATTGTTT 624
Query 664 -TTGACATGTGTGGTGATGCAAGAAATGATTTACATTTTGGATACTCTGTTTGGTTTTGC 722
|| |||| || ||||||||| | | || | | |||| | | || ||||||
Sbjct 625 GTT-ACATATGCGGTGATGCAGGGCAGGA--T-C---TTGG----GC-G--TGTTTTTGC 670
Query 723 TTACGAACCAAGACAAGGTTTATGGCAGTCAATTGG 758
||||||||||||||||||||||||||||||| ||||
Sbjct 671 TTACGAACCAAGACAAGGTTTATGGCAGTCA-TTGG 705
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5