BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900752

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25495.1 | Symbols:  | pseudogene of leucine-rich repeat pro...   100    4e-21


> AT3G25495.1 | Symbols:  | pseudogene of leucine-rich repeat protein 
| chr3:9244325-9250768 FORWARD LENGTH=6444
Length=6444

 Score =  100 bits (54),  Expect = 4e-21
 Identities = 69/76 (91%), Gaps = 2/76 (3%)
 Strand=Plus/Plus

Query  56    AGGTCCAAAGTC--CTGGCGTTGAGAATTTGATGATGATATATATAATAAACTTGCAAAT  113
             |||| |||||||   ||||||||| ||||||||||||||| || ||||||||||||||||
Sbjct  3118  AGGTACAAAGTCGTGTGGCGTTGACAATTTGATGATGATAGATGTAATAAACTTGCAAAT  3177

Query  114   ATTTGCATTATACATT  129
             ||||||||||||||||
Sbjct  3178  ATTTGCATTATACATT  3193



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8953640478


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5