BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900753

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G25495.1 | Symbols:  | pseudogene of leucine-rich repeat pro...   106    2e-22
  AT4G29180.2 | Symbols: RHS16 | root hair specific 16 | chr4:143...  73.1    2e-12


> AT3G25495.1 | Symbols:  | pseudogene of leucine-rich repeat protein 
| chr3:9244325-9250768 FORWARD LENGTH=6444
Length=6444

 Score =  106 bits (57),  Expect = 2e-22
 Identities = 63/66 (95%), Gaps = 0/66 (0%)
 Strand=Plus/Plus

Query  46    CTTAGTTCAAGTGGGTTACAAGGACCAATAGCCGTCTCATTTAGAAATCTCTCCTTTCTT  105
             ||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct  3867  CTTAGTTCAAGTGGGTTACAAGGACCAATAGCCGTCTCATTTAGACATCTTTCCCTTCTT  3926

Query  106   GAGTCA  111
             ||||||
Sbjct  3927  GAGTCA  3932


> AT4G29180.2 | Symbols: RHS16 | root hair specific 16 | chr4:14385593-14389689 
FORWARD LENGTH=2945
Length=2945

 Score = 73.1 bits (39),  Expect = 2e-12
 Identities = 41/42 (98%), Gaps = 0/42 (0%)
 Strand=Plus/Plus

Query  180   AGGACCACTTCTGCCTTCGGGAAAGAGAAGGTTCACATGTAG  221
             |||||||||||||||||||||||||||||||||||||| |||
Sbjct  1676  AGGACCACTTCTGCCTTCGGGAAAGAGAAGGTTCACATATAG  1717



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5