BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900756
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29800.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1456 0.0
AT2G29600.1 | Symbols: | Galactose oxidase/kelch repeat superf... 966 0.0
> AT2G29800.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:12722939-12724602 REVERSE LENGTH=1565
Length=1565
Score = 1456 bits (788), Expect = 0.0
Identities = 1109/1260 (88%), Gaps = 37/1260 (3%)
Strand=Plus/Plus
Query 72 CTCTGAAACTTCCGACGACGGTTCTAACGGCGGCGATCCAAA-CATgaaacccgaagaac 130
||||||||||||||||||||| ||||||||||||| |||||| || ||||||||||||||
Sbjct 12 CTCTGAAACTTCCGACGACGGCTCTAACGGCGGCGTTCCAAACCA-GAAACCCGAAGAAC 70
Query 131 cccacaagaacccgaaagaagaagaagaagagaatcaaaacgagaacccgaaagaagaag 190
||||||||||||| | |||||||| ||||||||||||||||||||||||| |||| ||
Sbjct 71 CCCACAAGAACCC---ACAAGAAGAAAAAGAGAATCAAAACGAGAACCCGAATGAAGCAG 127
Query 191 atcaagaaaacgatcatcaagaagaagaagaagtggagaaTCTTCCTCAGATTCCTCGAC 250
|| ||||| ||||||||| |||| |||||||| |||||| |||||| ||||||||||
Sbjct 128 ATGAAGAAGACGATCATC---AAGACGAAGAAGTAGAGAATGTTCCTCCGATTCCTCGAA 184
Query 251 AAATCCCACCAGAACTAATCGAAAAAACCATCGCACCCATCCGGAGATGTCATTACCCTT 310
|||||||||||| |||||||||||| || ||||||||| |||||||||||||||||||
Sbjct 185 AAATCCCACCAGTACTAATCGAAAACACTATCGCACCCCTCCGGAGATGTCATTACCCGA 244
Query 311 CGCTATCTCTCCTCTCTAACGCCTTTCGTCAAGTAATCTCTTCAGAGGATCTCTTCCAAA 370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AGCTATCTCTCCTCTCTAACGCCTTTCGTCAAGTAATCTCTTCAGAGGATCTCTTCCAAG 304
Query 371 CTCGCTCTCGCATCGGTTTGACCGAACCGGTTCTTTATACCTTGATCACGTTCAAGTACC 430
|||||| | |||||| | || |||||||||||||||||||||||||||||||||||||
Sbjct 305 TTCGCTCGCTCATCGGCTCAACGGAACCGGTTCTTTATACCTTGATCACGTTCAAGTACC 364
Query 431 CAACTTTTGAAGAACCAAGATGGTTCATTCTCCATCGGAGCAACAA--C-TCCTTACAAT 487
|||| ||||||||| |||||||||||||||||| ||||| ||||| | || ||| |||
Sbjct 365 CAACATTTGAAGAAGGAAGATGGTTCATTCTCCAACGGAGAAACAATACCTCTTTAAAAT 424
Query 488 TGAACAGAGTTACTTCTCTTCCTCCCATGTTTCTTGGATGCGCCGCCGTCACAATGGGCC 547
||||| | || || ||||||||||||||||||||||||||| | ||||||||||| || |
Sbjct 425 TGAACTGTGTAACATCTCTTCCTCCCATGTTTCTTGGATGCACTGCCGTCACAATAGGTC 484
Query 548 ACAAGATTTACGTAATGGGTGGTTATAACTTCCGCTACAATCGAACCGTAAGGACTATGC 607
|||||||||| ||| |||||||||||||||||||||||||| |||| |||| ||| |||
Sbjct 485 ACAAGATTTATGTAGTGGGTGGTTATAACTTCCGCTACAATAAAACCATAAGTACTGTGC 544
Query 608 TTGTCATAGATTGCAGATTCAATACGTATCGACAGCTCCGGAATATGCATAAGGATCGTT 667
||| |||||||| ||||||||||||| |||||| |||||||||||| | | ||||||||
Sbjct 545 TTGAGATAGATTGTAGATTCAATACGTGTCGACATCTCCGGAATATGAAGAGGGATCGTT 604
Query 668 GCTACGCAGCCGCTGGAGTGATCGACGGAAGGATTTACGTAGTCGGAGGTCGCAAGAGAC 727
||| ||||| ||||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct 605 GCTCCGCAGTCGCTGGAGTGATCGACGGAAGGATTTACGTAGTCGCCGGACGCCAGAGAC 664
Query 728 GATATAATGATTGGGTCGAAGTGTTCAATGTAGAGACTGAGCGTTGGGAACTTGTGCCTG 787
||| | |||||||||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct 665 GATTTGATGATTGGGTCGAAGTGTTCGATGTAGAGACTGAGAGATGGGAACTTGTGCCTG 724
Query 788 GTCCATTCTCTCCCCTTGCTAGTTATAGGGGAGAGTTTGATA-TACATGTGGTTTTGGAT 846
||||||||||| || ||||||||| ||| ||| ||||| || |||||||||||||||||
Sbjct 725 GTCCATTCTCTTCCTTTGCTAGTTCTAGTGGAAAGTTT-ATTGTACATGTGGTTTTGGAT 783
Query 847 AATAAGATTTACATTTTGGATGATGAGC-ATTGTTTTGCTTACGATCCAAGACGACGTAG 905
||||||||||||||| |||||| ||| | |||||||||| ||||||||||| ||||||||
Sbjct 784 AATAAGATTTACATTATGGATGGTGA-CTATTGTTTTGCGTACGATCCAAGGCGACGTAG 842
Query 906 ATGGGAGGCTTGGGGAATTGGAAGTGTACAGAGGAGTTTTTGGCACGCGTCGTCTTGTGT 965
||||||| |||||||| || ||||| ||||||||||| ||||||| ||||||||||||
Sbjct 843 ATGGGAGACTTGGGGACCTGAAAGTGCACAGAGGAGTTATTGGCACTTGTCGTCTTGTGT 902
Query 966 GGTTGATGATTTGTTATATGCCATTGTTCTTGATCGGGAGATTGCAGGAG-TTCCGATTG 1024
||||||||||||||| || || ||||||| | ||||||||| |||| ||| |||||
Sbjct 903 GGTTGATGATTTGTTGTACGCGATTGTTCCT---CGGGAGATTTTTGGAGCTTC-GATTG 958
Query 1025 TCGTTTATGATCCAAGGGAAATGGTTTGGAGATCTGTCAAGGGTTTAGCGTTTTGGCCTA 1084
|||||||||||||||||| ||| | ||||||| |||||| |||||||| |||||||||||
Sbjct 959 TCGTTTATGATCCAAGGGGAATAGCTTGGAGACCTGTCATGGGTTTAGAGTTTTGGCCTA 1018
Query 1085 ATGATCTCGTTTATTTCGAGTCTAGTATGGCGAATTATGGTGGGAAGCTGGTGGTTTTGG 1144
|| ||||||||||||||||||| |||||||||| |||||||||| ||||| ||||||
Sbjct 1019 AT---CTCGTTTATTTCGAGTCTAAAATGGCGAATTTTGGTGGGAAGTTGGTGATTTTGG 1075
Query 1145 GATGTTTTCGGAGTCATTATAGTATTGATTATTACGATAAAA-ATGTTTGGTGCGTAGAG 1203
|||||| ||||||| | | | | | ||||||||| | |||| | ||||||||||| |||
Sbjct 1076 GATGTTATCGGAGT-AGT-T--T-T-GATTATTAC-AGAAAAGACGTTTGGTGCGTTGAG 1128
Query 1204 GTGGCTTTGGAGAAACATGAAGATGGTGAAATTTTGGGGGA-GGTCGAATCATTCTCGCC 1262
||||||||||||||||||||||||||| |||||| |||||| |||||||||| ||||||
Sbjct 1129 GTGGCTTTGGAGAAACATGAAGATGGTCAAATTT-GGGGGAAGGTCGAATCACTCTCGCT 1187
Query 1263 TGTGAAAT-CATTCCGC-ATGTCGCCTTTCTTTGAGCTTTCTCGAACTGTTACGGTTTGA 1320
|||||| | |||||| | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1188 TGTGAA-TGCATTCC-CTATGTCGCCTTTCTTTGAGCTTTCTCGAACTGTTACGATTTGA 1245
> AT2G29600.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr2:12655151-12657296 FORWARD LENGTH=2057
Length=2057
Score = 966 bits (523), Expect = 0.0
Identities = 1045/1285 (81%), Gaps = 84/1285 (7%)
Strand=Plus/Plus
Query 72 CTCTGAAACTTCCGACGACGGTTCTAACGGCGGCGATCCAAA-CATgaaacccgaagaac 130
||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||
Sbjct 522 CTCTGAAACTTCCGACGACGGCTCTAACGGCGGCGATCCAAACCA-GAAACCCGAAGAAC 580
Query 131 cccacaagaacccgaaagaa-g--aagaagaagagaatcaaaacgagaacccgaaagaag 187
| |||||||||||| ||||| | ||||||||||||||||||||||||| || | |
Sbjct 581 CTCACAAGAACCCGCAAGAAGGTAAAGAAGAAGAGAATCAAAACGAGAAACC----G-A- 634
Query 188 aagatcaagaaaacgatcatcaagaagaagaagaagtggagaaTCTTCCTCAGATTCCTC 247
||| ||| ||||||||| ||||||||||||| |||||| |||||||||||||||
Sbjct 635 AAG---AAG---ACGATCATC---AAGAAGAAGAAGTAGAGAATGTTCCTCAGATTCCTC 685
Query 248 GACAAATCCCACCAGAACTAATCGAAAAAACCATCGC-ACCCATCCGGAGATGTCATTAC 306
|||||| |||| ||||||||||| || |||||||| || | |||||||||||||||||
Sbjct 686 CACAAATGCCACTAGAACTAATCGTAAGCACCATCGCGACTC-TCCGGAGATGTCATTAC 744
Query 307 CCTTCGCTATCTCTCCTCTCTAACGCCTTTCGTCAAGTAATCTCTTCAGAGGATCTCTTC 366
|| ||||||||||||||||| || |||||||||||||||||||||| | ||||||||||
Sbjct 745 CCGACGCTATCTCTCCTCTCTGACTCCTTTCGTCAAGTAATCTCTTCGGTGGATCTCTTC 804
Query 367 CAAACTCGCTCTCGCATCGGTTTGACCGAACCGGTTCTTTATACCTTGATCACGTTCAAG 426
||||||||||| | |||||| | ||| ||||||||||||||||||||||||||||||| |
Sbjct 805 CAAACTCGCTCGCTCATCGGCTCGACGGAACCGGTTCTTTATACCTTGATCACGTTCACG 864
Query 427 TACCCAACTTTTGAAGAACCAAGATGGTTCATTCTCCATCGGAGCAACAA--C-TCCTTA 483
| ||||| ||||||||||||||||||||| |||||||| ||||| ||||| | || |||
Sbjct 865 TCCCCAAATTTTGAAGAACCAAGATGGTTTATTCTCCAACGGAGAAACAATACCTCTTTA 924
Query 484 CAATTGAACAGAGTTACTTCTCTTCCTCCCATGTTTCTTGGATGCGCCGCCGTCACAATG 543
||||||| | ||| || ||||||||||||||||||| ||||||| | ||||||||||
Sbjct 925 CAATTGAGCTTAGTCACATCTCTTCCTCCCATGTTTCCTGGATGCACTACCGTCACAATC 984
Query 544 GGCCACAAGATTTACGTAATGGGTGGT-T-ATAA-CTTCCGCTACAATCGAAC-CGTAAG 599
|| |||||||||||||| |||||||| | | || ||| | | | |||| | || ||
Sbjct 985 GGACACAAGATTTACGTTATGGGTGGACTCAGAAGCTT--G--A-A-TCGA-CGCGCAAA 1037
Query 600 GACTATGCTTGTCATAGATTGCAGATTCAATACGTATCGAC-AGCTCC-GGAATATGCAT 657
|||| || ||||||| || ||||||||| |||||| || | | |||| ||| |||||
Sbjct 1038 GACTGTGTTTGTCATCGACTGCAGATTCCATACGTGGCG-CTATCTCCAGGAG-ATGCA- 1094
Query 658 AA-GGATCGTTGCTACGCAGCCGCTGGAGTGATCGACGGAAGGATTTACGTAGTCGGAGG 716
| || ||||| ||||||||| ||| |||||| ||||||| ||||||||| || |||||
Sbjct 1095 AGTGGCTCGTTCCTACGCAGCTTCTGCAGTGATTGACGGAATGATTTACGTGGTGGGAGG 1154
Query 717 T-CGCAAGAGACGATA-TAATGATTGGGTCGAAGTGTTCAATGTAGAGACTGAG-CGTTG 773
| | || | |||| | | |||||||||||||||||||||||||||||||| | | |||
Sbjct 1155 TTC-CACTAAACGA-AGTGATGATTGGGTCGAAGTGTTCAATGTAGAGACTAATAC-TTG 1211
Query 774 GGAACTTGTGCCTGGTCCATTCTCTCCCCT-TGCTAGTTATAGGGGAGAGTTTGATATAC 832
|||| ||||||| || ||| || ||||| || | ||| | | | |||| || | |
Sbjct 1212 GGAAAATGTGCCTAGTGTATTATC-CCCCTATGGTCGTTCGAAAGCACCGTTTAATGTTC 1270
Query 833 ATGTGGTTTTGGATAATAAGATTTACATTTTGGATGATGAGCATT-GTTTTGCTTACGAT 891
|| | ||||||||||||||||||||||||||||||| | | || | || | |||||||||
Sbjct 1271 ATTTCGTTTTGGATAATAAGATTTACATTTTGGATGGTAA-CAATCGTGTGGCTTACGAT 1329
Query 892 CCAAGACGACGTAGATGGGAGGCTTGGGGAATTG--G-AAGTGTACAGAGGAGT-TTT-T 946
| |||| ||||||||||||| | ||||||| || | || | | | || || ||| |
Sbjct 1330 CTAAGAGGACGTAGATGGGAAGATTGGGGACCTGCAGGAAATCAATTG-GG-GTATTTCT 1387
Query 947 GGCACGCGTCGTCTTGTGTGGTTGATGATTTGTTATATGCCATTGTTCTTGATCGGGAGA 1006
|||| | || || ||||||||||||| ||||||| |||||| |||||| |||| |
Sbjct 1388 GGCAGGTGTTGTATTGTGTGGTTGATAATTTGTTGTATGCCGTTGTTCCGGATC---ACC 1444
Query 1007 TTGCAGG-AGTTCCGATTGTCGTTTATGATCCAAGGGAAATGGTTTGGAGATCTGTCAAG 1065
|| || | | ||| |||||||| ||||||||||| ||||||| ||||||| |||||| |
Sbjct 1445 TT-CATGTAACTCCCATTGTCGTGTATGATCCAAGAGAAATGGGTTGGAGACCTGTCATG 1503
Query 1066 GGT-TTAGCGTT--TTGGCCTAATGATCTCGTTTATT-TCGAGTCTAGTATGGCGAATTA 1121
||| || | || ||| ||||| ||||||||| | |||||||| ||| ||||||
Sbjct 1504 GGTGTT-GA-TTACTTG-CCTAAC---CTCGTTTATAGT-GAGTCTAGAATGACGAATTT 1556
Query 1122 TGGTGGGAAGCTGGTGGTTTTGGGATGTTTTCGGAGTCATTATAG-TATTGATTATTACG 1180
|||||||||| || || |||||||||||| || || || ||| | ||||||||||||
Sbjct 1557 TGGTGGGAAGTTGATGATTTTGGGATGTTATCAAAGCCAGGCTAGGT-TTGATTATTACG 1615
Query 1181 AT-AA--AAATGTTTGGTGCGTAGAGGTGGCTTTGGAGAAACATGAAGATGGTGAAATTT 1237
|| |||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct 1616 GGGAAGTAAATGTTTGGTGCGTAGAGGTGGCGTTGGAGAGACGTGAAGATGGTGAAATTT 1675
Query 1238 TGGGGGA-GGTCGAATCATTCTCGCCTGTGAAATCA-TTCCGCATGTCGCCTTTCTTTGA 1295
|||||| |||| ||||| |||||| |||||| | | ||||||| ||||||| ||||||
Sbjct 1676 -GGGGGAAGGTCCAATCACTCTCGCTTGTGAA-TAAATTCCGCAAGTCGCCTGTCTTTGT 1733
Query 1296 GCTTTCTCGAACTGTTACGGTTTGA 1320
|||||||||||||||||||||||||
Sbjct 1734 GCTTTCTCGAACTGTTACGGTTTGA 1758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64959505230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5