BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900758
Length=2736
Score E
Sequences producing significant alignments: (Bits) Value
AT2G29890.3 | Symbols: VLN1 | villin-like 1 | chr2:12744150-127... 3832 0.0
> AT2G29890.3 | Symbols: VLN1 | villin-like 1 | chr2:12744150-12749596
FORWARD LENGTH=3074
Length=3074
Score = 3832 bits (2075), Expect = 0.0
Identities = 2332/2459 (95%), Gaps = 6/2459 (0%)
Strand=Plus/Plus
Query 1 ATGTCTAGGCTAAACAAAGACATTGATTCAGCATTTCACGGTGTTGGAACTAAAAGTGGC 60
||||||||||||| ||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 151 ATGTCTAGGCTAAGTAAAGACATTGATTCAGCGTTTCAAGGTGTTGGAACCAAAAGTGGC 210
Query 61 TTGGAGATTTGGTGCATTTATAATAATCAGCTTATTTCTATCTCC-AAGTCTTCTTTTGG 119
||||||||||||||| |||||||||| ||||||||||||||| || ||||||||||||||
Sbjct 211 TTGGAGATTTGGTGCGTTTATAATAAACAGCTTATTTCTATC-CCTAAGTCTTCTTTTGG 269
Query 120 AAAATTTCACTCTGGAAATGCATATCTTGTTCTCAGAACGTTTTTGCGGAAGATCGAATC 179
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 270 AAAATTTCACTCTGGAAATGCATACCTTGTTCTTAGAACGTTTTTGCGGAAGATCGAATC 329
Query 180 TCCCCAGTATGATATTCACTATTGGCTAGGAAATGATGCAAATGAGGTGGATTTAGTTTT 239
|||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||||
Sbjct 330 TCCCCAGTATGACATTCACTATTGGCTAGGAATTGATGCAAATGAGGTGGATTCAATTTT 389
Query 240 GGCATCAGACAAAGCATTAGAGTTAGATGCAGCACTTGGATGTTGTACGGTGCAATACCG 299
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 390 GGCATCAGACAAAGCATTAGATTTAGATGCCGCACTTGGATGTTGTACGGTGCAATACCG 449
Query 300 TGAAGTTCAAGGTCAAGAGACTGAGAAGTTTCTCTCTTACTTCAAACCTTGTATTATACC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 450 TGAAGTTCAAGGTCAAGAGACTGAGAAGTTTCTCTCTTACTTCAAACCTTGTATTATACC 509
Query 360 TGTTGAAGGCAAGTTTTCACCAAAAACTGGA-TTGGTTGGCGAGACATACCAAGTTATTT 418
|||||||||||||| ||| |||||||||||| ||| | ||||||||||||||||| | |
Sbjct 510 TGTTGAAGGCAAGTATTCCCCAAAAACTGGAATTGCT-GGCGAGACATACCAAGTCACCT 568
Query 419 TGCTAAGGTGCAAGGGAGATCATGTTGTTCGTGTTAAAGAGGTGCCTTTTCTTCGGTCAT 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 569 TGCTAAGGTGCAAGGGAGATCATGTTGTTCGTGTTAAAGAGGTGCCTTTTCTTCGGTCAT 628
Query 479 CACTGAACCATGATGATGTGTTCATTCTTGATACTGCATCAAAAGTTTTTCTCTTTGCTG 538
||||||||||||| ||||| |||||||| |||||||| ||||| |||||||| |||||||
Sbjct 629 CACTGAACCATGACGATGTCTTCATTCTGGATACTGCGTCAAAGGTTTTTCTTTTTGCTG 688
Query 539 GTTGCAACTCAAGCACTCAGGAAAAAGCTAAAGCCCTGGAGGTTGTGGAGTATATAAAGG 598
|||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||
Sbjct 689 GTTGTAACTCAAGCACTCAGGAAAAAGCTAAAGCGATGGAGGTTGTGGAATATATAAAGG 748
Query 599 ATAACAAGCATGACGGAAGATGTGAGGTGGCGACTATCGAGGATGGAAAATTTTCAGGTG 658
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 749 ATAACAAGCATGACGGAAGATGTGAGGTCGCGACTATCGAGGATGGAAAATTTTCAGGTG 808
Query 659 ATTCAGATTCTGGTGAATTCTGGTCTTTCTTTGGTGGTTATGCTCCCATTCCCAAGCTTC 718
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 ATTCAGATGCTGGGGAATTCTGGTCTTTCTTTGGTGGTTATGCTCCCATTCCCAAGCTTT 868
Query 719 CATCTTCAACCACCCAAGAACAGACGCAGACTACATATGCAGAATTGTTCTGGATAGATA 778
||||||| |||||||||||||| || |||||| ||| |||||||||||||||||||||||
Sbjct 869 CATCTTCTACCACCCAAGAACAAACTCAGACTCCATGTGCAGAATTGTTCTGGATAGATA 928
Query 779 CTAAGGGAAATCTACATCCAACTGGAACAAGTTCTTTGGACAAGGACATGCTTGaaaaaa 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 929 CTAAGGGAAATCTACATCCAACTGGAACAAGTTCTTTGGACAAGGACATGCTTGAGAAGA 988
Query 839 aCAAATGCTACATGCTGGACTGTTACAGTGAAGTATTTGTTTGGATGGGAAGAGCCACAT 898
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 989 ACAAATGCTACATGCTGGACTGTCACAGTGAAGTATTTGTTTGGATGGGAAGAAACACAT 1048
Query 899 CACTTACAGAAAGAAAGACATCCATTTCATCCTCAGAAGAATTTCTACGAAAGGAGGGAC 958
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1049 CACTTACAGAAAGGAAGACATCCATTTCTTCCTCAGAAGAATTTCTACGAAAGGAGGGAC 1108
Query 959 GCTGGACAACCACAAGTTTAGTACTTCTAACGGAAGGACTAGAAAATGCCAGATTCAGGT 1018
||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1109 GCTCGACGACCACAAGTTTAGTACTTCTAACAGAAGGACTAGAAAATGCCAGATTCAGGT 1168
Query 1019 CATTTTTTAGTAAGTGGCCTCAGACCGTAGAGTCTAGCCTTTACAATGAAGGTCGAGAAA 1078
||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1169 CATTTTTTAACAAATGGCCTCAGACCGTGGAGTCTAGCCTCTACAATGAAGGTCGAGAAA 1228
Query 1079 AAGTGGCAGCGATGTTCAAACAAAAAGGATATGACGTTGATGAGCTTCCTGATGAAGAAG 1138
||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1229 AAGTGGCTGCGTTGTTCAAACAAAAAGGATATGACGTTGAGGAGCTTCCTGATGAAGAAG 1288
Query 1139 ATGAACCTCTCTACACAAACTGCCGAGACACCCTCAAGGTTTGGCGTGTAGATGGTGATG 1198
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1289 ATGACCCTCTCTACACAAACTGCCGAGACAACCTCAAGGTTTGGCGTGTAGATGGTGATG 1348
Query 1199 AGGTCTCTATTCTCTCCATTCCTGACCAGACAAAGCTATTCAGCGGCGATTGTTATATTG 1258
| ||||| ||||||| ||||||||||||||||||||||||| ||||||||| ||| |||
Sbjct 1349 ACGTCTCGCTTCTCTCTATTCCTGACCAGACAAAGCTATTCACCGGCGATTGCTATCTTG 1408
Query 1259 TGCAGTACAAATATACTTATAATGAAAGAACCGAACATCTTTTATATGTATGGATCGGTT 1318
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1409 TGCAGTATAAATATACTTATAAAGAAAGAACCGAACATCTTTTATATGTATGGATCGGTT 1468
Query 1319 GTGAAAGCATACAGCAAGATAGAGCTGATGCCATAACCAATGCAAGTGCCATTGTTGGTT 1378
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1469 GTGAAAGCATACAGCAAGATAGAGCTGATGCCATAACCAATGCTAGTGCCATTGTTGGTA 1528
Query 1379 CAACCAAGGGTGAATCTGTAATGTGTCATATATATCAGGGAGACGAACCTTCTCGttttt 1438
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||
Sbjct 1529 CAACCAAGGGTGAATCTGTACTGTGTCATATATATCAGGGAAACGAACCTTCTCGGTTTT 1588
Query 1439 ttCCAATGTTCCAGTCGCTGGTTGTTTTTAAAGGCGGTTTGAGTAGACGGTACAAAATGT 1498
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1589 TTCCAATGTTCCAGTCACTGGTTGTTTTTAAGGGCGGTTTGAGTAGACGGTACAAAGTGC 1648
Query 1499 TTCTAGCAGAGAAGGAAAACGAAATGG-AAGAATATAATGAGAACAAGGCTTCTCTTTTC 1557
||||||||||||||||||| || | || ||||||||||||||||||||||||||||||||
Sbjct 1649 TTCTAGCAGAGAAGGAAAA-GATAGGGGAAGAATATAATGAGAACAAGGCTTCTCTTTTC 1707
Query 1558 CGTGTTGAAGGAACAAGCCCAAGGAACATGCAAGCAATCCAAGTTAATCTAGTGGCAACC 1617
||||||| ||||||||||||||| |||||||||||||||||||| |||||||| ||||||
Sbjct 1708 CGTGTTGTAGGAACAAGCCCAAGAAACATGCAAGCAATCCAAGTGAATCTAGTTGCAACC 1767
Query 1618 TCCTTGAACTCATCCTACTCGTACATTTTACAATATGGAGCTTCTGCCTTCACATGGATT 1677
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1768 TCCTTGAACTCATCCTACTCTTACATTTTACAATATGGAGCTTCTGCCTTCACTTGGATT 1827
Query 1678 GGAAAACTTTCATCAGACTCTGATCATGATGTTCTTGACAGAATGCTATATTTCCTTGAT 1737
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1828 GGGAAACTTTCATCAGACTCTGATCATGAAGTTCTTGACAGAATGCTATATTTCCTTGAT 1887
Query 1738 ACATCTTGTCAACCGATATACATCAGGGAAGGAAATGAACCAGACACATTTTGGGATTTG 1797
|||||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1888 ACATCTTGTCAACCTATATACATCAGGGAAGGAAATGAAACAGACACATTTTGGAATTTG 1947
Query 1798 CTTGGTGGTAAGTCAGAGTACCCAAAAGAAAGGGAAATGAGGAAACAAATAGAAGAACCA 1857
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 1948 CTTGGTGGTAAGTCAGAGTACCCAAAAGAAAAGGAAATGAGAAAACAAATAGAAGAACCA 2007
Query 1858 CATCTATTTACATGTTCCTGCAGTTCAGGTAATGATGTACTCAAGGTGAAAGAAATATAC 1917
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2008 CATTTATTTACATGTTCATGCAGTTCAGGTAATGATGTACTCAAGGTGAAAGAAATATAC 2067
Query 1918 AATTTCGTGCAAGACGATTTAACCACTGAAGATGTATTACTGTTGGACTGCCAAAGTGAA 1977
||||| |||||||| |||||||| |||||||||||||| || ||||||||||||||||||
Sbjct 2068 AATTTTGTGCAAGATGATTTAACTACTGAAGATGTATTTCTATTGGACTGCCAAAGTGAA 2127
Query 1978 GTATATGTTTGGATTGGATTAAACTCAAACATAAAGTCCAAGCAAGAAGCTCTTACTCTT 2037
|||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||||||
Sbjct 2128 GTATATGTCTGGATTGGATCAAACTCAAACATAAAGTCGAAGGAAGAAGCTCTTACTCTT 2187
Query 2038 GGTCTGAAATTCCTAGAGATGGATATTCTGGAAGAAGGTCTAACCGTGAGGACTCCTCTA 2097
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||
Sbjct 2188 GGTCTGAAATTCCTAGAGATGGATATACTGGAAGAAGGTCTAACCATGAGGACTCCTGTA 2247
Query 2098 TATGTTGTCACAGAAGGCCACGAGCCACCATTCTTCACCCGTTTCTTTGAGTGGGTTCCT 2157
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2248 TATGTTGTCACAGAAGGCCACGAGCCACCATTTTTCACCCGTTTCTTTGAGTGGGTTCCT 2307
Query 2158 GAAAAGGCAAACATGCATGGTAATTCATTTGAAAGGAAACTTGCTAGTCTGAAAGGAAAG 2217
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 2308 GAAAAGGCAAACATGCATGGTAATTCATTTGAAAGGAAGCTTGCTAGTTTGAAAGGAAAG 2367
Query 2218 AAGACAAGCACTAAGAGATCTAGTGGAAGCCAGTGGAGACCACAGTCGAAGGATAATGCA 2277
|||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||
Sbjct 2368 AAGACAAGCACTAAGAGATCTAGTGGAAGCCAGTATAGATCACAGTCAAAGGATAATGCA 2427
Query 2278 TCACGTGATTTACAAAGTCGATCTGTGAGCTTAAACGGATCGGAGCGAGGAGTATCACCT 2337
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2428 TCACGTGATTTACAAAGTCGATCTGTGAGCTCAAACGGATCGGAGCGAGGAGTATCACCT 2487
Query 2338 TGCTCCAGCGAAAAGCTTTCGAGATTGAGCTCTACAGAAGACATGACAAGCAGCAGCAAC 2397
||||||||||||||||||| ||| ||||||||| ||||||||||||||| |||||| |||
Sbjct 2488 TGCTCCAGCGAAAAGCTTTTGAGTTTGAGCTCTGCAGAAGACATGACAAACAGCAGTAAC 2547
Query 2398 TCAACTCCAGTTGTCAAAAAGCTTTTCTCAGAATCTCTTTTAGTGGATCCTAGTGATGG 2456
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2548 TCAACTCCAGTTGTCAAAAAGCTTTTCTCAGAATCTCTTTTAGTGGATCCTAATGATGG 2606
Score = 414 bits (224), Expect = 2e-114
Identities = 261/279 (94%), Gaps = 2/279 (1%)
Strand=Plus/Plus
Query 2459 TGGCGAGACAAGAGTCAAGCTCCAAGTCGGACATTTCTAATCAAAATCCA-GTCGGTGGA 2517
|||||||||||||||| || |||||||||||||||||||| || || ||| | || ||||
Sbjct 2675 TGGCGAGACAAGAGTCGAGTTCCAAGTCGGACATTTCTAAACAGAAGCCACG-CGTTGGA 2733
Query 2518 ATCAATCGCGATCTTAGTAGTCTAGAGTCGCTTACATATTCATATAAACAGCTCAGAGTT 2577
|||||| |||||||||||||||||||||| ||| ||||||||||| ||||||||||||||
Sbjct 2734 ATCAATAGCGATCTTAGTAGTCTAGAGTCACTTGCATATTCATATGAACAGCTCAGAGTT 2793
Query 2578 GATTCTCAGGAGCCAGTGTCAAATATAGATGCAACAAGAAGAGAGGCGTACTTAACAGAG 2637
||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 2794 GATTCTCAGAAGCCAGTGACGGATATAGATGCAACAAGAAGAGAGGCGTACTTAACAGAG 2853
Query 2638 AAAGAGTTTGAAGAGAGATTTGGAATGGCGAAATCTGAGTTCTATGCACTTCCAAAATGG 2697
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2854 AAAGAGTTTGAAGAGAGATTTGGAATGGCGAAATCTGAGTTCTATGCACTTCCAAAGTGG 2913
Query 2698 AAACAGAATAAACTTAAAATATCTCTTCATCTTTTCTAA 2736
|||||||||||||| ||||||||||||||||||||||||
Sbjct 2914 AAACAGAATAAACTCAAAATATCTCTTCATCTTTTCTAA 2952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 135902248587
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5