BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900781
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30090.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) sup... 1611 0.0
> AT2G30090.1 | Symbols: | Acyl-CoA N-acyltransferases (NAT) superfamily
protein | chr2:12843583-12845597 REVERSE LENGTH=1161
Length=1161
Score = 1611 bits (872), Expect = 0.0
Identities = 1014/1083 (94%), Gaps = 8/1083 (1%)
Strand=Plus/Plus
Query 1 ATGGTGGGGCAATGGGAGGAAGAAGTTGATGAAGAGGTGGTGATCAGATGCTACGATGAT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGGGCAATGGGAAGAAGAAGTTGATGAAGAGGTGGTGATCAGATGCTACGATGAT 60
Query 61 AGTAGGGACAGAATTCAAATGGGTCGTGTGGAGAAGAGTTGTGAGATTGGTCACGACCAA 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 CGTAGGGACAGAATTCAAATGGGTCGTATGGAGAAGAGTTGTGAGATTGGTCACGACCAC 120
Query 121 CAAACTCTTCTCTTCACAGACACTTTAGGCGATCCCATCTGCAGAATCCGAAATAGTCCT 180
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 CAAACTCTTCTCTTCACTGACACTTTAGGTGATCCCATCTGCAGAATCCGAAATAGTCCT 180
Query 181 TTCTTCATTATGCTGGTGGCAGAGGTTGGGAACAAGCTGGTAGGTTCCATACAAGGCTCA 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCTTCATTATGCTGGTGGCAGGGGTTGGGAACAAGCTGGTAGGTTCCATACAAGGCTCA 240
Query 241 GTAAAGCCAGTGGAGTTTCATGATAAGTCAGTGAGAGTTGGTTATGTTCTTGGTCTCAGA 300
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 241 GTAAAGCCAGTGGAGTTTCATGATAAGTCAGTGAGAGTGGGTTATGTCCTAGGTCTCAGA 300
Query 301 GTTGTGCCGCCGTATCGACGCCGTGGCATTGGTTCGATTCTGGTGAGAAAGCTTGAGGAA 360
||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 301 GTTGTGCCGTCGTATCGACGCCGTGGCATTGGATCGATTCTGGTGAGAAAACTTGAGGAA 360
Query 361 TGGTTCGAGTCTCACAATGCTGACTATGCTTACATGGCCACTCAAAAGGACAATGAGGCC 420
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 361 TGGTTCGAGTCTCACAATGCTGACTATGCTTACATGGCTACTGAAAAGGACAATGAGGCC 420
Query 421 TCTCTCGGTCTCTTCGTCGGGAAACTTGGCTATGTGGTCTTCCGAAACCCCGCAATCCTG 480
|||| |||||||||| |||||| ||||||||| || ||||| |||||||||||||||||
Sbjct 421 TCTCACGGTCTCTTCATCGGGAGACTTGGCTACGTCGTCTTTAGAAACCCCGCAATCCTG 480
Query 481 GTCAATCCTGTCAACCCCGGCCGCGGTTTAAAATTACCGTCTAACATTGGAATAAGGAAG 540
|||||||| |||||||||||||| ||||||||||| || ||| |||| ||||||||||||
Sbjct 481 GTCAATCCCGTCAACCCCGGCCGTGGTTTAAAATTGCCTTCTGACATCGGAATAAGGAAG 540
Query 541 CTAAAGGTGAAAGAGGCCGAGTCATTGTACCGGAGATATGTAGCAGCTACGACAGAATTT 600
|||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 541 CTAAAGGTGAAAGAAGCCGAGTCATTGTACCGGAGAAATGTGGCAGCTACGACAGAATTT 600
Query 601 TTCCCGGAAGATATTAACAAAATCTTGCGGAACAAGTTAAGTATCGGGACATGGTTGGCT 660
|||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 601 TTCCCGGACGACATTAACAAAATCTTGCGGAACAAGTTAAGTATCGGGACATGGGTGGCT 660
Query 661 TACTACAATGATG---ACAACACCAGAAGCTGGGCAATGCTTAGTGTTTGGGATAGTAGC 717
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TACTACAATAATGTCGACAACACCAGAAGCTGGGCAATGCTTAGTGTTTGGGATAGTAGC 720
Query 718 AAAGTCTTCAAACTTAGGATCGAGAGAGCTCCTTTGAGCTATTTGCTTCTCACTAAAGTT 777
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 AAAGTCTTCAAACTAAGGATCGAGAGAGCTCCTTTGAGCTATTTGCTTCTCACTAAAGTT 780
Query 778 TCCAAAATT-TTTGGTAAATTT-TTGTCGTTATTGGGATTAACGGCTATGCCGGATCTGT 835
|||||| || |||||||| ||| ||||| |||||||||||||| | | |||| ||| |||
Sbjct 781 TCCAAA-TTATTTGGTAA-TTTCTTGTCATTATTGGGATTAACAGTTTTGCCTGATTTGT 838
Query 836 TTACTTCGTTTGGGTTCTATTTCCTTTATGGGGTTCACTCGGAAGGTCCACTTTGTGGGA 895
||||| |||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 839 TTACTCCGTTTGGGTTCTATTTCCTTTACGGGGTTCACTCGGAAGGTCCACATTGTGGGA 898
Query 896 AACTAGTTAGGGCTTTGTGTGAGCACGTTCATAACATGGCTGCATCAGATGACAGTGGTG 955
||||||||||||||||||||||||||||||||||||||||||| | | |||| || | |
Sbjct 899 AACTAGTTAGGGCTTTGTGTGAGCACGTTCATAACATGGCTGCGTTAAATGATGGTTGCG 958
Query 956 CGTGTAAGGTTGTGGTGGTGGAGGTCGACAAAGGAAGTAACGGCGATGATTCTCTACAGA 1015
| ||||| || |||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 959 CATGTAAAGTCGTGGTGGTGGAGGTCGACAAAGGAAGTAACGGCGATGATTCTTTGCAAA 1018
Query 1016 GATGTATTCCACATTGGAAAATGCTTTCGTGTGACGATGATATGTGGTGTAT-ATGCCGT 1074
| |||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1019 GGTGTATTCCGCATTGGAAAATGCTTTCGTGTGACGATGATATGTGGTGTATCAAGCCGT 1078
Query 1075 TGA 1077
|||
Sbjct 1079 TGA 1081
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52760772795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5