BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900805
Length=1056
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30280.1 | Symbols: RDM4, DMS4 | RNA-directed DNA methylatio... 1594 0.0
> AT2G30280.1 | Symbols: RDM4, DMS4 | RNA-directed DNA methylation
4 | chr2:12909593-12912340 REVERSE LENGTH=1356
Length=1356
Score = 1594 bits (863), Expect = 0.0
Identities = 995/1056 (94%), Gaps = 20/1056 (2%)
Strand=Plus/Plus
Query 1 ATGGATGTGGTGGGGGAAAGCTCTTCGACTCAAAATGAGGTAGGAGAGAAGCCTGTGATT 60
||||||| |||||| ||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 105 ATGGATGGGGTGGGTGAAAG---TTCGACTCAAAATGAGGTAGAAGAGAAGCCTGTGATT 161
Query 61 GTTAGAGTTAAGCGAAAAGTTGGACAGTCTTTGCTCGATGCTTTCTGGTTGGAGATAAAT 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 162 GTTAGAGTTAAGCGAAAAGTTGGACAGTCTCTGCTCGATGCTTTCTGGTTGGAGATAAAT 221
Query 121 GAAAGACCACTCAAACGGCCCACTCTGGATTTATCAAAGCTATCTATTTCAGATTC-GTG 179
|||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| | |
Sbjct 222 GAAAGACCACTCAAACGGCCGACTCTGGATTTCTCAAAGCTATCTATTTCAGATTCAG-G 280
Query 180 TGAGAGAGGTCCTTCTGTGGCAGAGGATGTGAAACCGAAGAAGGTGCTGGTGCGGCATTT 239
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 281 GGAGAGAGGTCCTTCTGTGGCAGAGGATGTGAAACCGAAGAAGGTGCTAGTGCGGCATTT 340
Query 240 GGAGACAGTCACGGACTCTGAAACCACCGCTGACATTATCCACTCTCTCTTTGAGTCTGA 299
||||||||| ||||||||||||||||| ||||| |||||||||||| |||||||||||||
Sbjct 341 GGAGACAGTTACGGACTCTGAAACCACAGCTGATATTATCCACTCTTTCTTTGAGTCTGA 400
Query 300 TCTTACTGAGAAAAGTTGCAGCAAAGGAAAGTTTGAGGAGCGGAAATTTGCTTTCAAGAA 359
|| || ||||||||||||||| |||||||||||||||||| ||||| |||||||||||||
Sbjct 401 TCATAATGAGAAAAGTTGCAGTAAAGGAAAGTTTGAGGAGAGGAAAATTGCTTTCAAGAA 460
Query 360 AGACAATAGAAAGGAACAGCGCCTGACCAAATCTGTACAAAAGCAACAGATTGCTGCA-A 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 461 AGACAATAGAAAGGAACAGCGCCTGACCAAATCTGTACAAAAGCAACAGATTGCTTCAGA 520
Query 419 TGAATGCTCGGTTTGAGCAAATATGGCGGAGTAGGAAGGGAAACAAGGAAGGCATCCATG 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 -GAATGCTCGGTTTGAGCAAATATGGCGGAGTAGGAAGGGAAACAAGGAAGGCATCCATG 579
Query 479 ATAAGTGCCATTTCTTTGACGTTATTCGTGTTGATGCTGAAGAAAGACAAGACAGTGAAC 538
| ||||| ||||||||||||||||||||||||||| |||||||||||| ||||| || ||
Sbjct 580 AGAAGTGTCATTTCTTTGACGTTATTCGTGTTGATACTGAAGAAAGACGAGACAATGCAC 639
Query 539 AAGAGTTTACAT-CCTCGGAGGACCAGAAAATACTCGCTAGTTTCTTGCCTCTCCTTAGA 597
|||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 640 AAGAGTTTACATCCCT-GGAGGACCAGAAAATGCTCGCTAGTTTCTTGCCTCTCCTTAGA 698
Query 598 GAATGTATTCCAACAGCAGCTGAAGAGATTGAAGCTGATATACAATCTAGTCACACCGAA 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 GAATGTATTCCAACAGCAGCTGAAGAGATTGAAGCTGATATACAATCTAGTCACACCGAA 758
Query 658 GAATACGTTTATGATTATTATGCTGTGAACGAAGAGATGGATATCAGCGAAGATAGTTCC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 759 GAATACGTTTATGATTATTATGCTGTGAACGAAGAGATGGATATCAGCGAAGATAGTTCC 818
Query 718 AAGAATCAGTTTCCTCTTGTCATAGTAGAGGATGAAGAAGAATTCTGTGATGGATCTGAT 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 819 AAGAATCAGTTTCCTCTTGTCATAGTAGAGGATGAAGAAGAATTCTGTGATGGATCTGAT 878
Query 778 GAATCAGACTTTGACTCTGAAGATTCAAACGCTGAAGATCATCCAAAGACCGATTACCCa 837
|||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 879 GAATCAGACTACGACTCTGAAGATTCAAACGCTGAAGATCATCCAAAGACTGATTACCCA 938
Query 838 gaagagatctctgaagacgaggaggaagaagaagaagaagaagatgatgatgatgatgat 897
|| ||| ||||| || || ||||||||||||| || ||||||||||||||||||
Sbjct 939 GAGGAG------GAAGAAGA--AG-AAGAAGAAGAAGATGATGATGATGATGATGATGAT 989
Query 898 gaaacagaaaaagaaaagagtgaagCCTCTGATGAATCAGACGACGAGGAGACTTCACAA 957
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 990 GAATCAGAAGAAGAAAAGAGTGAAGCCTCTGATGAATCAGACGACGAGGAGACTTCA-AA 1048
Query 958 A-GACATGTGAGAAGGGTCCTTGGAGATGACGAGTTTGATGATTACGAAGAGGATGTGAA 1016
| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1049 ACGACATGTGAGAAGTGTCCTTGGAGATGACGAGTTTGATGATTACGCAGAGGATGTGTA 1108
Query 1017 TGATTATAGGGAGAGCGAGGAGGAGTTTGAGTCTTA 1052
|| ||| || |||||||| |||||||||||||||||
Sbjct 1109 TGGTTACAGCGAGAGCGATGAGGAGTTTGAGTCTTA 1144
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51791405557
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5