BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900847
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30660.1 | Symbols: | ATP-dependent caseinolytic (Clp) prot... 1351 0.0
AT2G30650.1 | Symbols: | ATP-dependent caseinolytic (Clp) prot... 1291 0.0
AT5G65940.1 | Symbols: CHY1 | beta-hydroxyisobutyryl-CoA hydrol... 1243 0.0
> AT2G30660.1 | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase
family protein | chr2:13058250-13061673 REVERSE
LENGTH=1395
Length=1395
Score = 1351 bits (731), Expect = 0.0
Identities = 1001/1130 (89%), Gaps = 23/1130 (2%)
Strand=Plus/Plus
Query 1 ATGGCCTCTCACTCTCAGGTTTTAGTGGAAGATAAATCCAGTGTTAGAATCTTGACATTA 60
||||| ||||| ||||||||||| |||||||| ||||| ||||||||||| |||||||||
Sbjct 9 ATGGCATCTCAATCTCAGGTTTTGGTGGAAGAGAAATCAAGTGTTAGAATTTTGACATTA 68
Query 61 AACAGACCGAATCAACTGAATGCTCTATGCTT-AGACATGATCTCTCGGTTGCTACAACT 119
||| |||| || || || |||||||| ||||| | ||||||||||||||||||| |||||
Sbjct 69 AACCGACCCAAGCAGCTTAATGCTCTGTGCTTCA-ACATGATCTCTCGGTTGCTGCAACT 127
Query 120 GTTCCTTGCATATGAGGAGGACCCTAGTGTGAAACTTGTCATCCTTAAA-GGTCAGGGAA 178
|||| |||||||||||| ||||||||||| ||||||||||||| |||| ||||| ||||
Sbjct 128 ATTCCGTGCATATGAGGAAGACCCTAGTGTTAAACTTGTCATCC-TAAAGGGTCAAGGAA 186
Query 179 GAGCCTTTTGTGCTGGTGGTGACGCTCTACCTCTTGTTCGTGACATCGTACAAGGCAAAT 238
||||||||||||| ||||| |||| || |||| |||||| |||| |||||||| ||||
Sbjct 187 GAGCCTTTTGTGCCGGTGGCGACGTTCCACCTGTTGTTCAAAACATGGTACAAGGTAAAT 246
Query 239 GGAGACTCGCCGCCAATTTCTTAACATATCAATACACGCTTAACTATGTTTTGGCCACGT 298
||||||| | ||| ||||||| | | ||||||||||||| || |||||| |||||||||
Sbjct 247 GGAGACTTGGTGCCGATTTCTTCAGAGATCAATACACGCTCAATTATGTTATGGCCACGT 306
Query 299 ATAGCAAACCTCAGGTTTCGATTTTTAATGGTATTGTCATGGGAGGTGGAGCTGGTCTCT 358
||||||||||||||||||| ||||| ||||||||||||||||||| || |||||| |||
Sbjct 307 ATAGCAAACCTCAGGTTTCAATTTTGAATGGTATTGTCATGGGAGCCGGTGCTGGTGTCT 366
Query 359 CTATCCATGGTCGATTTCGTATTGCAACTGAAAACACGGTTTTTGCAATGCCTGAGACAG 418
| ||||||||||||||||| ||||||||||| |||||||||||||| ||||| ||||||
Sbjct 367 CCATCCATGGTCGATTTCGCATTGCAACTGAGAACACGGTTTTTGCCATGCCGGAGACA- 425
Query 419 T-TTTGGGACTCTTTCCAGATGTAGGCGCCTCCTACTTCTTGTCAAGACTCCCTGGATTT 477
| | |||| |||||||||||||||||||||||||| ||| ||||| | ||||||||||||
Sbjct 426 TCTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTATTTCCTGTCACGGCTCCCTGGATTT 485
Query 478 TTTGGAGAGTATGTTGGCCTCACTGGAGCTAGGTTAGATGGGGCTGAAATGCTTGCGTGT 537
|||||||||||||||||||| || ||||||||||||||||| |||||| |||||||||||
Sbjct 486 TTTGGAGAGTATGTTGGCCTTACAGGAGCTAGGTTAGATGGCGCTGAATTGCTTGCGTGT 545
Query 538 GGTCTTGCAACTCATTTTGTGCCTTCAATTAGGTTGACTGCACTAGAAGA-AGATCTTTG 596
|||||||||||||||||||| ||||||| |||||||| || |||||| | |||||||||
Sbjct 546 GGTCTTGCAACTCATTTTGTTCCTTCAACGAGGTTGACAGCTCTAGAA-ACAGATCTTTG 604
Query 597 CAAAGTTGGTTCAAGTGATCCAAGCTTTGTCTCAACAATTCTTGATGCATACACTCAGCA 656
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 CAAAGTTGGGTCAAGTGATCCAAGCTTTGTCTCAACAATTCTTGATGCATACACTCAGCA 664
Query 657 TCCCCACCTTAAACAGAAGAGTGCTTACCTCAGGCAAGTGTTAGATGTTATTGATAGGTG 716
||| ||||||||||||||||||||||||| | || | |||||||||||| ||||||||
Sbjct 665 TCCGCACCTTAAACAGAAGAGTGCTTACC--A--CA-G-GTTAGATGTTATCGATAGGTG 718
Query 717 CTTCTC-AAGAAGAACAGTCGAAGAAATTCTATCTGCACTTGAGAGAGAGACCGCTCATC 775
|||||| |||| ||||| | ||||||||| ||||||||||||||||||||||| ||||
Sbjct 719 CTTCTCGAAGA-GAACAATGGAAGAAATTATATCTGCACTTGAGAGAGAGACCACTCA-- 775
Query 776 AGGAACCAAATGATTGGATCTCAACCATC-ACTGGAGCATTGAAGAAGGCTTCACCATCA 834
|| ||| | ||||||||| || ||| | | | | |||| ||||||||| ||||||| |||
Sbjct 776 AG-AACTAGATGATTGGAGCTTAACTA-CGATTCGAGCTTTGAAGAAGTCTTCACCCTCA 833
Query 835 AGCCTTAAAATATCTCTTAGATCGATAAGAGAAGGAAGATTGCAAGGCGTTGGGGAGTGT 894
||||||||||||||||||||||||||||||||||||||||||||||| || || | |||
Sbjct 834 AGCCTTAAAATATCTCTTAGATCGATAAGAGAAGGAAGATTGCAAGGGGTAGGACACTGT 893
Query 895 CTTATCCGTGAGTATAGAATGGCGTGTCATGTGTTCAAGGGAGAAATAAGCAAAGACTTT 954
|||| ||| ||||||||||||| |||||||||| | |||||||| |||||||||||||
Sbjct 894 CTTACCCGCGAGTATAGAATGGTGTGTCATGTGATGAAGGGAGATTTAAGCAAAGACTTG 953
Query 955 GTGGAGGGGTGCAGAGCGATATTGATAGACAAAGATAGGAACCCAAAGTGGAAGCCAAGG 1014
||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 954 GTGGAGGGGTGCAGAGCCATATTGATAGACAAAGATAGGAATCCAAAGTGGGAGCCAAGG 1013
Query 1015 CGACTAGAGGACATGAAGGATAGCATGGTAGATAAGTACTTTGAGAGAGTGGAGGAAGAG 1074
||| | ||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||
Sbjct 1014 CGATTGGAGGACATGAAGGATAGCATGGTAGATCAGTTCTTTGAGAGAGTGGAAGAAGAG 1073
Query 1075 GAGGGATGGGAGGAT-TTAAAGCTTTTGCCAAGGAACAACTTTCATGCTT 1123
||| ||||||||||| |||| ||||| |||||||||||||| |||||||
Sbjct 1074 GAGCGATGGGAGGATCTTAA-GCTTTCACCAAGGAACAACTTGCATGCTT 1122
> AT2G30650.1 | Symbols: | ATP-dependent caseinolytic (Clp) protease/crotonase
family protein | chr2:13053777-13056380 REVERSE
LENGTH=1202
Length=1202
Score = 1291 bits (699), Expect = 0.0
Identities = 999/1141 (88%), Gaps = 31/1141 (3%)
Strand=Plus/Plus
Query 1 ATGGCCTCTCACTCTCAGGTTTTAGTGGAAGATAAATCCAGTGTTAGAATCTTGACATTA 60
||||| ||||||||||||||||| |||||||| ||||| || |||||||||||||||||
Sbjct 66 ATGGCATCTCACTCTCAGGTTTTGGTGGAAGAGAAATCGAGCGTTAGAATCTTGACATTT 125
Query 61 AACAGACCGAATCAACTGAATGCTCTATGCTTAGACATGATCTCTCGGTTGCTACAACTG 120
|||||||| || || || |||||||| | ||| ||||| ||||||||||| | ||||||
Sbjct 126 AACAGACCCAAGCAGCTTAATGCTCTGTCCTTCCACATGGTCTCTCGGTTGTTGCAACTG 185
Query 121 TTCCTTGCATATGAGGAGGACCCTAGTGTGAAACTTGTCATCCTTAAA-GGTCAGGGAAG 179
|||||||||||||| || ||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 186 TTCCTTGCATATGAAGAAGACCCTAGTGTGAAACTTGTCGTCC-TAAAGGGTCAGGGAAG 244
Query 180 AGCCTTTTGTGCTGGTGGTGACGCTCTACCTCTTGTTCGTGACATCGTACAAGGCAAA-T 238
|||||||| ||||||||| ||| || |||| |||||||||| ||| ||||||||||| |
Sbjct 245 AGCCTTTTCTGCTGGTGGGGACATTCCACCTATTGTTCGTGATATCCTACAAGGCAAACT 304
Query 239 GGAGACTCGCCGCCAATTTCTT-AACA-TATCAATACACGCTTAACTATGTTTTGGCCAC 296
|| || || ||| ||| ||| || | | | ||||||||| |||||||||||| ||||
Sbjct 305 -GATACGCGGTGCCCATTACTTCAA-AGT-TGGATACACGCTCAACTATGTTTTGTCCAC 361
Query 297 GTATAGCAAACCTCAGGTTTCGATTTTTAATGGTATTGTCATGGGAGGTGGAGCTGGTCT 356
|||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 362 GTATAGAAAACCTCAGGTTTCAATTTTGAATGGTATTGTCATGGGAGGTGGAGCTGGTCT 421
Query 357 CTCTATCC-ATGGTCGATTTCGTATTGCAACTGAAAACACGGTTTTTGCAATGCCTGAGA 415
||||| || ||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 422 CTCTA-CCAATGGTCGATTTCGTATTGCAACTGAGAACACGGTTTTCGCAATGCCTGAGA 480
Query 416 CAG-TTTTGGGACTCTTTCCAGATGTAGGCGCCTCCTACTTCTTGTCAAGACTCCCTGGA 474
||| | | ||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 481 CAGCTCTAGGG-CTCTTTCCAGATGTAGGGGCCTCTTACTTCTTGTCAAGACTCCCTGGA 539
Query 475 TTTTTTGGAGAGTATGTTGGCCTCACTGGAGCTAGGTTAGATGGGGCTGAAATGCTTGCG 534
||||||||||||||||||||||| || ||||||||||||||||| || |||||||||||
Sbjct 540 TTTTTTGGAGAGTATGTTGGCCTTACAGGAGCTAGGTTAGATGGCGCCGAAATGCTTGCA 599
Query 535 TGTGGTCTTGCAACTCATTTTGTGCCTTCAATTAGGTTGACTGCACTAGAAGAAGATCTT 594
|||||||||||||||||||||||||||||||| || ||||||||| |||||| ||| |||
Sbjct 600 TGTGGTCTTGCAACTCATTTTGTGCCTTCAATAAGTTTGACTGCATTAGAAGCAGAGCTT 659
Query 595 TGCAAAGTTGGTTCAAGTGATCCAAGCTTTGTCTCAACAATTCTTGATGCATACACTCAG 654
| |||||||||||||||| ||| || |||| ||||||||||||| ||||||||| || ||
Sbjct 660 TACAAAGTTGGTTCAAGTAATCAAACCTTTATCTCAACAATTCTCGATGCATACGCTGAG 719
Query 655 CATCCCCACCTTAAACAGAAGAGTGCTTACCTCAGGCAAGTGTTAGATGTTATTGATAGG 714
|||| ||||| || ||| | ||| |||||| | || | |||||||||||||||||||
Sbjct 720 TATCCGCACCTGAACCAGCATAGTTCTTACC--A--CA-G-GTTAGATGTTATTGATAGG 773
Query 715 TGCTTCTC-AAGAAGAACAGTCGAAGAAATTCTATCTGCACTTGAGAGAGAGACCGCTCA 773
|||||||| || ||||||||| || |||||| | |||||||||||||||||| | | ||
Sbjct 774 TGCTTCTCGAA-AAGAACAGTGGAGGAAATTTTCTCTGCACTTGAGAGAGAGGTCACACA 832
Query 774 TCAGGAACCAAATGATTGGATCTCAACCATCACTGGAGCATTGAAGAAGGCTTCACCATC 833
| ||||||| |||||| ||| | | | || | ||||||| ||||||||||||||||
Sbjct 833 A-A--AACCAAACGATTGGCTCTTAGCTACCATTCAAGCATTGGAGAAGGCTTCACCATC 889
Query 834 AAGCCTTAAAATATCTCTTAGATCGATAAGAGAAGGAAGATTGCAAGGCGTTGGGG-AGT 892
| |||||||||| || || ||||||||||||||||||||||||||||| || |||| |||
Sbjct 890 ATGCCTTAAAATCTCGCTAAGATCGATAAGAGAAGGAAGATTGCAAGGGGT-GGGGCAGT 948
Query 893 GTCTTATCCGTGAGTATAGAATGGCGTGTCATGTGTTCAAGGGAGAAATAAGCAAAGACT 952
|||||||||||||||||||||||| |||||||||| | |||||||| |||||||||||||
Sbjct 949 GTCTTATCCGTGAGTATAGAATGGTGTGTCATGTGATGAAGGGAGACATAAGCAAAGACT 1008
Query 953 TTGTGGAGGGGTGCAGAGC-GATATTGATAGACAAAGATAGGAACCCAAAGTGGAAGCCA 1011
||||||||||||||||||| | |||||||||||||||||||||| ||||||||| |||||
Sbjct 1009 TTGTGGAGGGGTGCAGAGCAG-TATTGATAGACAAAGATAGGAATCCAAAGTGGCAGCCA 1067
Query 1012 AGGCGACTAGAGGACATGAAGGATAGCATGGTAGATAAGTACTTTGAGAGAGTGGAGGAA 1071
|||||||| |||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1068 AGGCGACTCGAGGACGTGACGGATAGCATGGTAGATCAGTACTTTGAGAGAGTGGAGGAT 1127
Query 1072 GAGGAGGGATGGGAGGAT-TTAAAGCTTTT-GCCAAGGAACAACTTTCATGCTTCAGCAA 1129
|||||||||||||||||| |||| | ||| ||||||||||||||| | ||||| |||||
Sbjct 1128 GAGGAGGGATGGGAGGATCTTAA-G-TTTCCGCCAAGGAACAACTTGCCTGCTTTAGCAA 1185
Query 1130 T 1130
|
Sbjct 1186 T 1186
> AT5G65940.1 | Symbols: CHY1 | beta-hydroxyisobutyryl-CoA hydrolase
1 | chr5:26376610-26379235 REVERSE LENGTH=1431
Length=1431
Score = 1243 bits (673), Expect = 0.0
Identities = 983/1130 (87%), Gaps = 32/1130 (3%)
Strand=Plus/Plus
Query 1 ATGGCCTCTCACTCTCAGGTTTTAGTGGAAGATAAATCCAGTGTTAGAATCTTGACATTA 60
||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||| ||
Sbjct 87 ATGGCCTCTCAGTCTCAGGTTTTGGTGGAAGAGAAATCGAGTGTTAGAATCTTGACACTA 146
Query 61 AACAGACCGAATCAACTGAATGCTCTATGCTTAGACATGATCTCTCGGTTGCTACAACTG 120
|||||||| || || ||||||||||| | ||| ||||||||||||| ||||| ||||||
Sbjct 147 AACAGACCAAAGCAGCTGAATGCTCTGTCCTTCCACATGATCTCTCGATTGCTGCAACTG 206
Query 121 TTCCTTGCATATGAGGAGGACCCTAGTGTGAAACTTGTCATCCTTAAA-GGTCA-GGGAA 178
|||||||||| |||||||||||||||||||||||||||||||| |||| ||||| ||| |
Sbjct 207 TTCCTTGCATTTGAGGAGGACCCTAGTGTGAAACTTGTCATCC-TAAAGGGTCATGGG-A 264
Query 179 GAGCCTTTTGTGCTGGTGGTGACGCT-CTACCTCTTGTTCGTGACATCGTA-CAAGGCAA 236
||||||||||||||||||| || | | | | || |||||||||||||| | ||||| ||
Sbjct 265 GAGCCTTTTGTGCTGGTGGCGATGTTGC-AGCTGTTGTTCGTGACATC-AATCAAGGTAA 322
Query 237 ATGGAGACTCGCCGCCAATTTCTTAACATATCAATACACGCTTAACTATGTTTTGGCCAC 296
|||||||||| ||||||| ||| ||| | |||||| ||| ||||||||| |||||||
Sbjct 323 CTGGAGACTCGGTGCCAATTACTTCTCATCTGAATACATGCTCAACTATGTTATGGCCAC 382
Query 297 GTATAGCAAACCTCAGGTTTCGATTTTTAATGGTATTGTCATGGGAGGTGGAGCTGGTCT 356
||||||||| |||||||||| || || |||||||| ||||||||||| ||||||||| |
Sbjct 383 ATATAGCAAAGCTCAGGTTTCAATCTTGAATGGTATCGTCATGGGAGGCGGAGCTGGTGT 442
Query 357 CTCTATCCATGGTCGATTTCGTATTGCAACTGAAAACACGGTTTTTGCAATGCCTGAGAC 416
|| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 443 ATCCGTCCATGGTCGATTTCGTATTGCAACTGAGAACACGGTTTTTGCCATGCCTGAGAC 502
Query 417 AGTTTTGGGACTCTTTCCAGATGTAGGCGCCTCCTACTTCTTGTCAAGACTCCCTGGATT 476
|| | |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 503 AGCTCTGGGGCTCTTTCCAGATGTAGGCGCCTCCTACTTCTTGTCAAGGCTCCCTGGTTT 562
Query 477 TTTTGGAGAGTATGTTGGCCTCACTGGAGCTAGGTTAGATGGGGCTGAAATGCTTGCGTG 536
|||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||| ||
Sbjct 563 TTTTGGGGAGTATGTTGGCCTCACAGGAGCTAGATTAGATGGTGCTGAAATGCTTGCTTG 622
Query 537 TGGTCTTGCAACTCATTTTGTGCCTTCAATTAGGTTGACTGCACTAGAAGAAGATCTTTG 596
||| ||||||||||||||||||||||||| |||||||||||| |||||| |||||||||
Sbjct 623 TGGCCTTGCAACTCATTTTGTGCCTTCAACGAGGTTGACTGCATTAGAAGCAGATCTTTG 682
Query 597 CA-AAGTTGGTTCAAGTGATCCAAGCTTT-GTCTCAACAATTCTTGATGCATACACTCAG 654
|| || || ||||| |||||||| |||| | |||||||||||| ||||||||||| |||
Sbjct 683 CAGAA-TTAATTCAAATGATCCAA-CTTTTGCCTCAACAATTCTCGATGCATACACCCAG 740
Query 655 CATCCCCACCTTAAACAGAAGAGTGCTTACCTCAGGCAAGTGTTAGATGTTATTGATAGG 714
||||| | ||| |||||| |||||||||||| | || | |||||||||||||||||||
Sbjct 741 CATCCGCGCCTGAAACAGCAGAGTGCTTACC---G-CA-G-GTTAGATGTTATTGATAGG 794
Query 715 TGCTTCTCAAGAAGAACAGTCGAAGAAATTCTATCTGCACTTGAGAGAGAGACCGCTCAT 774
|| |||||||| |||||||||||||||||| |||||||||||||||||||| || ||||
Sbjct 795 TGTTTCTCAAGGAGAACAGTCGAAGAAATTATATCTGCACTTGAGAGAGAGGCCACTCA- 853
Query 775 CAGGAACCAAATGATTGGATCTCAACCATCACTGGAGCATTGAAGAAGGCTTCACCATCA 834
|| || || ||| |||||||||| | | || | |||||||||||||| ||||||| ||
Sbjct 854 -AG-AAGCAGATGGTTGGATCTCAGCTACCATTCAAGCATTGAAGAAGGGTTCACCAGCA 911
Query 835 AGCCTTAAAATATCTCTTAGATCGATAAGAGAAGGAAGATTGCAAGGCGTTGGGG-AGTG 893
||||||||||| ||||||||||||||||| ||||| ||||||| || || |||| ||||
Sbjct 912 AGCCTTAAAATCTCTCTTAGATCGATAAGGGAAGGGCGATTGCAGGGGGT-GGGGCAGTG 970
Query 894 TCTTATCCGTGAGTATAGAATGGCGTGTCATGTGTTCAAGGGAGAAATAAGCAAAGACTT 953
||||||||| ||||||||||||| |||||||||| | ||||||||||| |||||||| ||
Sbjct 971 TCTTATCCGCGAGTATAGAATGGTGTGTCATGTGATGAAGGGAGAAATCAGCAAAGATTT 1030
Query 954 TGTGGAGGGGTGCAGAGCGATATTGATAGACAAAGATAGGAACCCAAAGTGGAAGCCAAG 1013
|||||||||||||||||| |||||| |||||||||||| ||||||||||||| |||||||
Sbjct 1031 TGTGGAGGGGTGCAGAGCCATATTGGTAGACAAAGATAAGAACCCAAAGTGGGAGCCAAG 1090
Query 1014 GCGACTAGAGGACATGAAGGATAGCATGGTAGATAAGTACTTTGAGAGAGTGGAGGAAGA 1073
|||||| ||||||||||||||||||||||| || ||||||| ||||||||||| | |
Sbjct 1091 GCGACTGGAGGACATGAAGGATAGCATGGTGGAGCAGTACTTCGAGAGAGTGGA--ACG- 1147
Query 1074 GGAGGGATGGGAGGATTTAAAGCTTTTGCCAAGGAACAACTTTCATGCTT 1123
||||| ||| | | |||||||| ||||||||| ||||| | |||||
Sbjct 1148 GGAGG-ATG--A---TCTAAAGCTTCCGCCAAGGAATAACTTGCCTGCTT 1191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5