BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900854
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30730.1 | Symbols: | Protein kinase superfamily protein | ... 1332 0.0
AT2G30740.1 | Symbols: | Protein kinase superfamily protein | ... 1291 0.0
AT1G06700.1 | Symbols: | Protein kinase superfamily protein | ... 944 0.0
> AT2G30730.1 | Symbols: | Protein kinase superfamily protein
| chr2:13093145-13094677 FORWARD LENGTH=1017
Length=1017
Score = 1332 bits (721), Expect = 0.0
Identities = 882/960 (92%), Gaps = 10/960 (1%)
Strand=Plus/Plus
Query 114 TGCAAAGCCTGAGGAGACTCTTCCCATTGA-AGTTCCTCCCTTGTCTGTTGACGAGGTTA 172
|||||||||| |||||| |||||||||| | ||||||| ||||||| || || |||||||
Sbjct 63 TGCAAAGCCTAAGGAGATTCTTCCCATT-ATAGTTCCTTCCTTGTCAGTGGATGAGGTTA 121
Query 173 AAGAAAAGACTGACAATTTTGGATCAAAGTCTCTGATTGGTGAGGGATCTTATGGAAGGG 232
| ||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 122 ATGAACAGACTGACAATTTTGGACCAAATTCTCTGATTGGTGAGGGATCTTATGGAAGGG 181
Query 233 TATACTATGCAACTCTAAATGATGGAAAAGCAGTTGCTTTGAAGAAACTCGATGTTGCGC 292
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 182 TATACTATGCAACTCTAAATGATGGAAAAGCAGTTGCTTTGAAGAAACTCGATCTTGCAC 241
Query 293 CTGAAGATGAAACAAACGCCGAGTTCTTAAGCCAGGTTTCCATGGTATCAAGACTAAAGC 352
||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||
Sbjct 242 CTGAAGATGAAACAAACACCGAGTTTTTAAGCCAGGTTTCCATGGTTTCAAGACTAAAGC 301
Query 353 ATGAGAATCTCATTCAACTAGTTGGTTATTGTGTTGACGAAAAACTACGTGTTCTTGCTT 412
||||||||||||||||||| || |||||||||||||| ||||| || |||||||||||||
Sbjct 302 ATGAGAATCTCATTCAACTGGTCGGTTATTGTGTTGATGAAAACCTTCGTGTTCTTGCTT 361
Query 413 ATGAGTTGGCAACGATGGGATCATTGCACGACATTTTACATGGTAGGAAGGGAGTTCAAG 472
||||||| ||||| ||||||||||||||||| ||| | ||||||||||||||||||||||
Sbjct 362 ATGAGTTTGCAACAATGGGATCATTGCACGATATTCTGCATGGTAGGAAGGGAGTTCAAG 421
Query 473 GCGCACAACCAGGTCCAACACTTGATTGGATAACGAGGGTGAAGATAGCGGTTGAGGCAG 532
|||| |||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 422 ATGCACTACCAGGTCCAACACTTGACTGGATAACAAGGGTGAAGATAGCCGTTGAGGCAG 481
Query 533 CTAGGGGTTTAGAATACCTTCATGAGAAGGTTCAACCTCATGTAATACATAGGGACATAA 592
|||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||
Sbjct 482 CTAGAGGTTTAGAATACCTTCATGAGAAGGTTCAGCCTCAAGTAATACATAGAGACATAA 541
Query 593 GATCTAGCAATGTGCTTCTTTTTGAAGACTATAAAGCAAAAATTGCTGATTTTAATCTTT 652
||||||||||| | ||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 542 GATCTAGCAATATACTTCTTTTTGACGACTATCAAGCAAAAATTGCTGATTTTAATCTTT 601
Query 653 CAAATCAAGCTCCTGATAATGCTGCTCGTCTT-CAATCTACAAGAATCTTGGGAACCTTT 711
|||||||| |||||||||||||||||||| || |||||||||||| | ||||| | ||||
Sbjct 602 CAAATCAATCTCCTGATAATGCTGCTCGT-TTACAATCTACAAGAGTTTTGGGCAGCTTT 660
Query 712 GGTTATCACTCTCCAGAATATGCTATGACTGGAGAGTTGACACATAAGAGTGACGTATAT 771
|| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 661 GGCTATTACTCTCCAGAATATGCTATGACTGGAGAGTTGACACATAAGAGTGATGTATAT 720
Query 772 AGTTTTGGTGTAGTACTTCTAGAGCTCTTGAC-GGGAAGGAAACCTGTGGATCC-TACAA 829
||||||| || |||||||||||||||||||| |||| ||||||| || || || |||||
Sbjct 721 GGTTTTGGGGTTGTACTTCTAGAGCTCTTGACAGGGA-GGAAACCAGTTGA-CCATACAA 778
Query 830 TGCCACGTGGCCAACAAAGTCTTGTAACTTGGGCTACACCAAAACTTAGTGAAGATGA-A 888
|||| || |||||||||||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 779 TGCCGCGAGGCCAACAAAGTCTTGTAACTTGGGCTACACCGAAACTTAGTGAAGAT-ACA 837
Query 889 GTAGAGCAGTGTGTTGATCCAAAGCTAAAAGGAGAATATCCTCCTAAATCAGTAGCTAAG 948
|||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 838 GTAGAGGAGTGTGTTGATCCAAAGCTAAAGGGAGAATATTCTCCTAAATCAGTAGCTAAG 897
Query 949 CTAGCAGCGGTGGCAGCATTGTGTGTGCAATATGAATCTGAGTGTAGACCAAAAATGAGC 1008
||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 898 CTAGCAGCGGTGGCAGCATTGTGTGTGCAATATGAATCTAATTGTAGACCAAAAATGAGT 957
Query 1009 ACAGTTGTGAAAGCTTTGCAACAGCTTCTTGTAGCGCCAATCCCAATACCGCAATCCTAA 1068
||||||||||||||||||||||| |||||| ||||| || | |||||||||||| ||||
Sbjct 958 ACAGTTGTGAAAGCTTTGCAACAACTTCTTATAGCGACAGGCTCAATACCGCAATTCTAA 1017
> AT2G30740.1 | Symbols: | Protein kinase superfamily protein
| chr2:13095976-13098594 FORWARD LENGTH=1498
Length=1498
Score = 1291 bits (699), Expect = 0.0
Identities = 939/1052 (89%), Gaps = 27/1052 (3%)
Strand=Plus/Plus
Query 1 ATGCGCAGGTGGATGTGTTGTGCTGG-TAAAAAAGGAGTTTCAGATTCGTCAAATGAGGA 59
||||| |||||||| ||||||| || ||||||||||| |||||||| |||||||| ||
Sbjct 89 ATGCGTAGGTGGATCTGTTGTG-GGGATAAAAAAGGAGATTCAGATTTATCAAATGAAGA 147
Query 60 GTTACATATGAAAAGTCCATGGCAAAATTCTGACGCAAATCAAAAGAATC----A--A-A 112
| | ||| ||||||||||||||||||||||||| |||||||||||||||| | | |
Sbjct 148 GGTGCATTTGAAAAGTCCATGGCAAAATTCTGAGGCAAATCAAAAGAATCAAAAACCACA 207
Query 113 A-----TGCAAAGCCTGA---G--G--AG-A-CTCTTCCCATTGAAGTTCCTCCCTTGTC 158
| || ||||||||| | | || | |||||||||| |||||||||||||||||
Sbjct 208 AGCTGTTGTAAAGCCTGAGGCGCAGAAAGAAGCTCTTCCCATCGAAGTTCCTCCCTTGTC 267
Query 159 TGTTGACGAGGTTAAAGAAAAGACTGACAATTTTGGATCAAAGTCTCTGATTGGTGAGGG 218
||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 268 TGTGGATGAGGTTAAAGAAAAGACTGACAATTTTGGATCTAAGTCTCTGATTGGTGAGGG 327
Query 219 ATCTTATGGAAGGGTATACTATGCAACTCTAAATGATGGAAAAGCAGTTGCTTTGAAGAA 278
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 328 TTCTTATGGAAGGGTATATTATGCAACTCTAAATGATGGGAAAGCAGTTGCTTTGAAGAA 387
Query 279 ACTCGATGTTGCGCCTGAAGATGAAACAAACGCCGAGTT-CTTAAGCCAGGTTTCCATGG 337
|||||||||||| ||||||| |||||||||| ||||||| || || |||||||||||||
Sbjct 388 ACTCGATGTTGCACCTGAAGCTGAAACAAACACCGAGTTCCTGAA-TCAGGTTTCCATGG 446
Query 338 TATCAAGACTAAAGCATGAGAATCTCATTCAACTAGTTGGTTATTGTGTTGACGAAAAAC 397
| ||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct 447 TTTCAAGACTAAAACATGAGAATCTCATTCAACTGGTTGGTTATTGTGTTGATGAAAACC 506
Query 398 TACGTGTTCTTGCTTATGAGTTGGCAACGATGGGATCATTGCACGACATTTTACATGGTA 457
| |||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||
Sbjct 507 TCCGTGTTCTTGCTTATGAGTTTGCAACAATGGGATCACTGCACGACATTCTACATGGTA 566
Query 458 GGAAGGGAGTTCAAGGCGCACAACCAGGTCCAACACTTGATTGGATAACGAGGGTGAAGA 517
|||||||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||
Sbjct 567 GGAAGGGAGTTCAAGGAGCACAGCCAGGTCCAACACTTGACTGGTTAACGAGGGTGAAGA 626
Query 518 TAGCGGTTGAGGCAGCTAGGGGTTTAGAATACCTTCATGAGAAGGTTCAACCTCATGTAA 577
|||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 627 TAGCTGTTGAGGCAGCTAGGGGTTTAGAATACCTTCATGAGAAGGTTCAGCCTCCTGTAA 686
Query 578 TACATAGGGACATAAGATCTAGCAATGTGCTTCTTTTTGAAGACTATAAAGCAAAAATTG 637
||||||| |||||||||||||||||||| || ||||||||||||||| |||||||| |||
Sbjct 687 TACATAGAGACATAAGATCTAGCAATGTTCTCCTTTTTGAAGACTATCAAGCAAAAGTTG 746
Query 638 CTGATTTTAATCTTTCAAATCAAGCTCCTGATAATGCTGCTCGTCTTCAATCTACAAGAA 697
| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 747 CAGATTTTAATCTCTCAAATCAAGCTCCTGATAATGCTGCTCGTCTTCACTCTACGAGAG 806
Query 698 TCTTGGGAACCTTTGGTTATCACTCTCCAGAATATGCTATGACTGGAGAGTTGACACATA 757
| || || |||||||| |||||| ||||||||||||||||||| ||| |||| || || |
Sbjct 807 TTTTAGGCACCTTTGGCTATCACGCTCCAGAATATGCTATGACAGGACAGTTAACGCAGA 866
Query 758 AGAGTGACGTATATAGTTTTGGTGTAGTACTTCTAGAGCTCTTGACGGGAAGGAAACCTG 817
|||||||||| ||||| ||||| || || ||||||||||| ||||| |||||||||||||
Sbjct 867 AGAGTGACGTGTATAGCTTTGGGGTTGTTCTTCTAGAGCTTTTGACAGGAAGGAAACCTG 926
Query 818 TGGATCCTACAATGCCACGTGGCCAACAAAGTCTTGTAACTTGGGCTACACCAAAACTTA 877
| |||| |||||||||||| |||||||| ||||||||||||||||||||||| | ||| |
Sbjct 927 TAGATCATACAATGCCACGCGGCCAACAGAGTCTTGTAACTTGGGCTACACCGAGACTCA 986
Query 878 GTGAAGATGAAGTAGA-GCAGTGTGTTGATCCAAAGCTAAAAGGAGAATATCCTCCTAAA 936
|||||||| |||| || ||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 987 GTGAAGATAAAGT-GAAGCAATGTGTTGATCCAAAGTTAAAAGGAGAATATCCTCCTAAA 1045
Query 937 TCAGTAGCTAAGCTAGCAGCGGTGGCAGCATTGTGTGTGCAATATGAATCTGAGTGTAGA 996
|||||||| ||||||||||||||||||||||| ||||||||||| |||||||||| ||||
Sbjct 1046 TCAGTAGCCAAGCTAGCAGCGGTGGCAGCATTATGTGTGCAATACGAATCTGAGTTTAGA 1105
Query 997 CCAAAAATGAGCACAGTTGTGAAAGCTTTGCA 1028
||||| ||||| | |||||| |||||||||||
Sbjct 1106 CCAAATATGAGTATAGTTGTAAAAGCTTTGCA 1137
> AT1G06700.1 | Symbols: | Protein kinase superfamily protein
| chr1:2052483-2055280 REVERSE LENGTH=1535
Length=1535
Score = 944 bits (511), Expect = 0.0
Identities = 772/898 (86%), Gaps = 18/898 (2%)
Strand=Plus/Plus
Query 131 CTCTTCCCATTGAAGTTCCTCCCTTGTCTGTT-GACGAGGTTAAAGAAAAGACTGACAAT 189
|||||||||| || || |||||||||||| || || ||||| || ||||||||||| |||
Sbjct 325 CTCTTCCCATCGAGGTCCCTCCCTTGTCT-TTGGATGAGGTCAAGGAAAAGACTGAAAAT 383
Query 190 TTTGGATCAAAGTCTCTGATTGGTG-AGGGATCTTATGGAAGGGTATACTATGCAACTCT 248
|||||||| ||| | |||||||||| |||| |||||||| || ||||| ||||| || ||
Sbjct 384 TTTGGATCCAAGGCACTGATTGGTGAAGGG-TCTTATGGGAGAGTATATTATGCGACACT 442
Query 249 AAATGATGGAAAAGCAGTTGCTTTGAAGAAACTCGATGTTGCGCCTGAAGATGAAACAAA 308
||||||||| || |||||| |||||||||| ||||| || ||||||| ||||||| |
Sbjct 443 AAATGATGGTGTGGCGGTTGCTCTGAAGAAACTTGATGTCGCACCTGAAGCTGAAACAGA 502
Query 309 CGCCGAGTTCTTAAGCCAGGTTTCCATGGTATCAAGACTAAAGCATGAGAATCTCATTCA 368
|||| ||||| || |||||||||||||| || || || |||||||| |||||||||||
Sbjct 503 TACCGAATTCTTGAGTCAGGTTTCCATGGTCTCTAGGCTGAAGCATGAAAATCTCATTCA 562
Query 369 ACTAG-TTGGTTATTGTGTTGACGAAAAACTACGTGTTCTTGCTTATGAGTTGGCAACGA 427
| | | |||||| ||||||||| | ||| || || || ||||| |||||||| ||||| |
Sbjct 563 A-TTGCTTGGTTTTTGTGTTGATGGAAACCTCCGCGTCCTTGCATATGAGTTTGCAACAA 621
Query 428 TGGGATCATTGCACGACATTTTACATGGTAGGAAGGGAGTTCAAGGCGCACAACCAGGTC 487
||||||| ||||| ||||| || ||||||||||||||||||||||| |||||||||||||
Sbjct 622 TGGGATCGTTGCATGACATCTTGCATGGTAGGAAGGGAGTTCAAGGAGCACAACCAGGTC 681
Query 488 CAACACTTGATTGGATAACGAGGGTGAAGATAGCGGTTGAGGCAGCTAGGGGTTTAGAAT 547
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 682 CAACACTTGACTGGATAACGAGGGTGAAGATAGCGGTTGAGGCAGCTAGGGGTTTGGAAT 741
Query 548 ACCTTCATGAGAAGGT-TCAACCTCATGTAATACATAGGGACATAAGATCTAGCAATGTG 606
|||| ||||||||| | ||| |||| |||||| ||||||||||||||||||||||||||
Sbjct 742 ACCTCCATGAGAAG-TCTCAGCCTCCTGTAATCCATAGGGACATAAGATCTAGCAATGTC 800
Query 607 CTTCTTTTTGAAGACTATAAAGCAAAAATTGCTGATTTTAATCTTTCAAATCAAGCTCCT 666
||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||| |||
Sbjct 801 CTTCTTTTTGAAGACTACAAAGCAAAGATTGCTGATTTCAATCTCTCGAATCAAGCACCT 860
Query 667 GATAATGCTGCTCGTCTTCAATCTACAAGAATCTTGGGAACCTTTGGTTATCACT-CTCC 725
||||||||||| |||||||| || |||||| ||||||| || ||||||||||| | ||||
Sbjct 861 GATAATGCTGCCCGTCTTCACTCAACAAGAGTCTTGGGGACTTTTGGTTATCA-TGCTCC 919
Query 726 AGAATATGCTATGACTGGAGAGTTGACACATAAGAGTGACGTATATAGTTTTGGTGTAGT 785
||||||||| ||||||||| |||| || || |||||||| || || || |||||||| ||
Sbjct 920 AGAATATGCAATGACTGGACAGTTAACTCAGAAGAGTGATGTGTACAGCTTTGGTGTTGT 979
Query 786 ACTTCTAGAGCT-CTTGAC-GGGAAGGAAACCTGTGGATCCTACAATGCC-ACGTGGCCA 842
||||||||| || ||| || |||| ||||||| ||||||| ||| ||||| | | || ||
Sbjct 980 ACTTCTAGAACTTCTT-ACAGGGA-GGAAACCGGTGGATCATACCATGCCTA-GAGGTCA 1036
Query 843 ACAAAGTCTTGTAACTTGGGCTACACCAAAACTTAGTGAAGATGAAGT-AGAGCAGTGTG 901
||| ||||||||||| ||||| ||||||| ||| ||||||||| |||| | | |||||
Sbjct 1037 ACAGAGTCTTGTAACCTGGGCGACACCAAGACTCAGTGAAGATAAAGTGAAA-CAGTGCA 1095
Query 902 TTGATCCAAAGCTAAAAGGAGAATATCCTCCTAAATCAGTAGCTAAGCTAGCAGCGGTGG 961
|||||||||||||||||| || || ||||| ||| |||| |||||||||||||||||||
Sbjct 1096 TTGATCCAAAGCTAAAAGCCGATTACCCTCCAAAAGCAGTTGCTAAGCTAGCAGCGGTGG 1155
Query 962 CAGCATTGTGTGTGCAATATGAATCTGAGTGTAGACCAAAAATGAGCACAGTTGTGAA 1019
||||||||||||||||||| ||| |||||| ||||||||| ||||||| |||||||||
Sbjct 1156 CAGCATTGTGTGTGCAATACGAAGCTGAGTTTAGACCAAATATGAGCATAGTTGTGAA 1213
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5