BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900858
Length=207
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30760.1 | Symbols: | unknown protein; Has 3 Blast hits to ... 255 8e-68
AT2G30766.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 117 4e-26
> AT2G30760.1 | Symbols: | unknown protein; Has 3 Blast hits to
3 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:13105770-13108221 REVERSE LENGTH=279
Length=279
Score = 255 bits (138), Expect = 8e-68
Identities = 170/185 (92%), Gaps = 4/185 (2%)
Strand=Plus/Plus
Query 1 ATGCACATGATCAAGCCGCCGGAGCAACGTCACAGTCGTCGTCATCATCGTCTCCTCCGT 60
||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 1 ATGCAAATGATCAAGCCGCCGGTGCAACGTCACAGTCATCGTCGTCATCGTCTCCTCCGT 60
Query 61 TCTCTTGGCCACCAGTTTTCTTTTGGTTTCTTTGCCCTTTGTGAAAAGCTAAGAGAGTGC 120
|||||||||||||| |||||||||||||| ||||||||||||||||||| |||||| |||
Sbjct 61 TCTCTTGGCCACCAATTTTCTTTTGGTTTTTTTGCCCTTTGTGAAAAGCAAAGAGAATGC 120
Query 121 AAGTGTGACCTGGACA-CGGATATGACCACAAATTTGTACAACGTGGCGA-GTCATGGCC 178
||||||||| ||| || ||| ||||||||||||||||||||||||||| | ||||| |||
Sbjct 121 AAGTGTGACATGG-CAACGGTTATGACCACAAATTTGTACAACGTGGC-ACGTCATAGCC 178
Query 179 CGCAC 183
|||||
Sbjct 179 CGCAC 183
> AT2G30766.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 30201 Blast
hits to 17322 proteins in 780 species: Archae - 12; Bacteria
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:13108007-13108470
FORWARD LENGTH=464
Length=464
Score = 117 bits (63), Expect = 4e-26
Identities = 73/78 (94%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 1 ATGCACATGATCAAGCCGCCGGAGCAACGTCACAGTCGTCGTCATCATCGTCTCCTCCGT 60
||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 215 ATGCAAATGATCAAGCCGCCGGTGCAACGTCACAGTCATCGTCGTCATCGTCTCCTCCGT 156
Query 61 TCTCTTGGCCACCAGTTT 78
|||||||||||||| |||
Sbjct 155 TCTCTTGGCCACCAATTT 138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9255448584
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5