BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900876

Length=699
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30933.1 | Symbols:  | Carbohydrate-binding X8 domain superf...  1014    0.0  


> AT2G30933.1 | Symbols:  | Carbohydrate-binding X8 domain superfamily 
protein | chr2:13164059-13166726 REVERSE LENGTH=1013
Length=1013

 Score = 1014 bits (549),  Expect = 0.0
 Identities = 611/640 (95%), Gaps = 7/640 (1%)
 Strand=Plus/Plus

Query  4    GGA-AAAGGCTTCAGACTAGTAACCAGtcttcttcttctcttcttcctcttcAGCTCAGG  62
            ||| |||||||||||| |||||||||||||||||||||||| |||| ||||   ||||||
Sbjct  212  GGATAAAGGCTTCAGATTAGTAACCAGTCTTCTTCTTCTCTCCTTCTTCTT---CTCAGG  268

Query  63   TACAAAAGCTAGTACTGAACCAATAGAAGAAGAAAAAGACATAACCACACCATTAGCCAC  122
            ||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  269  TACAAAAGCAATTACTGAACCAATAGAAGAAGAAAAAGACATAACCACACCATTAGCCAC  328

Query  123  AAACCCAACCACCACACCAACAACCGTGGTCCCTAACTCCGACTCTGACGCTTCCGCGGT  182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  329  AAACCCAACCACCACACCAACAACCGTGGTCCCTAACTCCGACTCTGACGCTTCCGCGGT  388

Query  183  GGCCACAACGCCACTAACGATTCCATCGCCACCACACGGTGTAGCCTATCCAGGTGATCA  242
            |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct  389  GGCCACAACGCCACTAACGATTCCATCGTCACCACACGGTGTAGCCTACCCAGGTGATCA  448

Query  243  GAGCTGGTGCGTTGCTAGAGAGAGCGTTGCAAAAATGGCGTTACAAGCGGCTTTGGACTA  302
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  449  GAGCTGGTGCGTTGCTAGAGAGAACGTTGCAAAAATGGCGTTACAAGCGGCTTTGGACTA  508

Query  303  TGCTTGTGGGATCGGTGGAGCAGACTGCTCGGAGATACAAGAAGGAGGAAATTGTTATAA  362
            ||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  509  TGCATGTGGGATTGGTGGAGCAGACTGCTCTGAGATACAAGAAGGAGGAAATTGTTATAA  568

Query  363  CCCCAACTCGTTGAGAGCACATGCCTCTTTTGCCTTCAACAGTTATTACCAGAAGAATCC  422
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  569  CCCCAACTCGTTGAGAGCACATGCCTCTTTTGCCTTCAATAGTTATTACCAGAAGAATCC  628

Query  423  AATCCCTAGTAGTTGCAATTTTGATGGAACTGCTGTCACTATCAGTGCTGACCCGAGTTT  482
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct  629  AATCCCTAGTAGTTGCAATTTTGATGGAACTGCTATCACTATCAGTGCTGACCCAAGTTT  688

Query  483  AGGATCATGCCACTTTCCGTCTACAAGCACGAGTGAATCGATATTGAACGTAACAAGTGA  542
            ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  689  AGGTTCATGCCACTTTCCATCTACAAGCACGAGTGAATCGATATTGAACGTAACAAGTGA  748

Query  543  AGATGGATTAGGGCTTTTCGGGAGAATACCGTCACATCCAACTCCCAAGCCCGAAGCTTC  602
            |||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct  749  AGATGGATTAGGGCTTTTCGGGAGAATACCATCTCATCCAACTCCCAAGCCTGAAGCTTC  808

Query  603  AACCTCCTCCACCACAACTTT---CTCATTTCTCTACTTC  639
            |||||||||| | | ||||||   ||||||||||||||||
Sbjct  809  AACCTCCTCCTCAAGAACTTTGATCTCATTTCTCTACTTC  848



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33857815078


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5