BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900883

Length=369
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH) ...   359    1e-98


> AT1G51070.2 | Symbols: bHLH115 | basic helix-loop-helix (bHLH) 
DNA-binding superfamily protein | chr1:18927877-18929680 FORWARD 
LENGTH=1187
Length=1187

 Score =  359 bits (194),  Expect = 1e-98
 Identities = 232/251 (92%), Gaps = 0/251 (0%)
 Strand=Plus/Plus

Query  31   AGGATCAAATCGGAATCTTGTGCTGGTTCTAGCTCGAAAGCATGTAGGGAGAAACAAAGA  90
            ||||||||| | ||||||||  ||||||||| ||||||||| ||||||||||||||||||
Sbjct  514  AGGATCAAAACTGAATCTTGCACTGGTTCTAACTCGAAAGCTTGTAGGGAGAAACAAAGA  573

Query  91   CGTGATAGGCTAAATGACAAGTTTACGGAATTGAGTTCCATCTTGGAACCTGGGAGAGCT  150
            |||||||| |||||||||||||||||||| ||||||||| | ||||||||||||||| ||
Sbjct  574  CGTGATAGACTAAATGACAAGTTTACGGAGTTGAGTTCCGTATTGGAACCTGGGAGAACT  633

Query  151  CCAAAAACAGACAAGGTTGCTATTATCAGTGATGCAATTCGCATGGTGAATCAAGTTAGA  210
            |||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||
Sbjct  634  CCAAAAACAGACAAGGTTGCTATTATCAATGATGCAATTCGCATGGTGAATCAAGCAAGA  693

Query  211  GACGAAGCACAGAAATTGAAGGACTTGAATTCAAGCCTCCAGGAGAAAATCAAGGAGTTG  270
            || ||||| |||||| | ||||||||||| ||||||||||||||||||||||||||||||
Sbjct  694  GATGAAGCGCAGAAACTAAAGGACTTGAACTCAAGCCTCCAGGAGAAAATCAAGGAGTTG  753

Query  271  AAGGATGAGAA  281
            |||||||||||
Sbjct  754  AAGGATGAGAA  764



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17342373405


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5