BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900885
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34980.1 | Symbols: SLP2 | subtilisin-like serine protease 2... 998 0.0
> AT4G34980.1 | Symbols: SLP2 | subtilisin-like serine protease
2 | chr4:16656691-16659339 REVERSE LENGTH=2649
Length=2649
Score = 998 bits (540), Expect = 0.0
Identities = 653/707 (92%), Gaps = 10/707 (1%)
Strand=Plus/Plus
Query 1 GTAATCATTGGCGTATTCGATACCGGAATCTGGCCAGAGAGGAGGAGTTTCTCATATCTC 60
|||||||||||||| || || |||||||| ||||| ||| |||||||||||||| ||||
Sbjct 489 GTAATCATTGGCGTTTTTGACACCGGAATTTGGCCGGAGCGGAGGAGTTTCTCAGATCTT 548
Query 61 AACCTCGGTCCAATTCCAAAACGGTGGAGAGGTGTTTGCGAATCCGGAGCAAGATTTGGT 120
||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| ||
Sbjct 549 AACCTCGGTCCAATTCCAAAAAGGTGGAGAGGCGTTTGCGAATCCGGAGCCAGATTCAGT 608
Query 121 CCTTGGAACTGTAACCGAAAAATCGTCGGAGCAAGATTCTTCGCTAAAGGG-CAACAAGA 179
||| ||||||||||||| ||||| |||||||||||||||||||| ||||| |||||||
Sbjct 609 CCTCGGAACTGTAACCGTAAAATTATCGGAGCAAGATTCTTCGCT-AAGGGACAACAAGC 667
Query 180 CGCCGTAATCGGAGGAATCAACAAAACCGTTGAGTTTCTATCTCCTCGTGACGCCGATGG 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 CGCTGTAATCGGAGGAATCAACAAAACCGTTGAGTTTCTATCTCCTCGTGACGCCGATGG 727
Query 240 ACACGGTACTCACACTTCCTCAACCG--GC---C-GTCATGCTTTCAAAGCGAGTATGTC 293
|||||||||||||||||||||||||| || | |||| ||||| ||||||||||||||
Sbjct 728 ACACGGTACTCACACTTCCTCAACCGCCGCTGGCCGTCACGCTTTTAAAGCGAGTATGTC 787
Query 294 CGGTTACGCCTCCGGTGTAGCCAAAGGTGTTGCTCCTAAAGCACGTATCGCCACCTACAA 353
|||||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||
Sbjct 788 CGGTTACGCCTCCGGTGTAGCCAAAGGTGTTGCTCCAAAAGCTCGTATCGCCGCCTACAA 847
Query 354 AGTCTGTTGGAAAGAATCCGGTTGTCTCGATTCCGATATCCTCGCCGCTTTTGATGCGGC 413
||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 848 AGTCTGTTGGAAAGATTCCGGTTGTCTCGATTCCGATATTCTCGCCGCCTTTGATGCCGC 907
Query 414 TAGT-AGAGACGGCGTCGACGTTATATCGATCTCAATCGGTGGTGGTGACGGGATTACTT 472
| || |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 908 T-GTTAGAGACGGTGTCGACGTTATATCGATCTCAATCGGTGGTGGAGACGGGATTACTT 966
Query 473 CTCCGTATTACCTCGATCCAATCGCTATAGGCTCATACGGCGCCGCGTCGAAAGGAATCT 532
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 967 CGCCGTATTACCTCGATCCAATCGCTATAGGCTCGTACGGCGCCGCGTCGAAAGGAATCT 1026
Query 533 CCGTTTCTTCTTCCGCCGGAAACGAAGGACCTAACGGTATGTCAGTTACAAACCTCGCAC 592
||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1027 TCGTCTCTTCCTCTGCCGGAAACGAAGGACCTAACGGTATGTCAGTTACGAACCTCGCGC 1086
Query 593 CGTGGGTAACCACCGTTGGTGCTAGTACAATCGATCGGAATTTCCCGGCGGATGCAATTC 652
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1087 CGTGGGTAACCACCGTTGGTGCTAGTACAATCGATCGGAATTTCCCAGCGGATGCTATTC 1146
Query 653 TCGGTGACGGACATCGTCTCAGAGGCGTGTCTCTCTACGCCGGAGTA 699
|||| |||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 1147 TCGGCGACGGACATCGTCTCAGAGGAGTGTCTCTTTACGCTGGAGTA 1193
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5