BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900887
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT2G30960.1 | Symbols: | unknown protein; Has 4906 Blast hits ... 676 0.0
> AT2G30960.1 | Symbols: | unknown protein; Has 4906 Blast hits
to 2903 proteins in 334 species: Archae - 5; Bacteria - 381;
Metazoa - 1639; Fungi - 509; Plants - 244; Viruses - 5; Other
Eukaryotes - 2123 (source: NCBI BLink). | chr2:13177179-13178328
REVERSE LENGTH=1068
Length=1068
Score = 676 bits (366), Expect = 0.0
Identities = 580/674 (86%), Gaps = 51/674 (8%)
Strand=Plus/Plus
Query 1 ATGGAGGAGAAGAACAC-TGACGGCAAAAGAAAGACTGTTCCTTC-GATTCCGGCTAATT 58
||||||||||||||||| | |||||||||||||||||||||| || |||||||||||| |
Sbjct 15 ATGGAGGAGAAGAACACAT-ACGGCAAAAGAAAGACTGTTCC-TCTGATTCCGGCTAACT 72
Query 59 ACATCAGCATCCTTCAGCTTCAAGAGCGTTGGCTCAaagagaaagagaagaagcgaaagg 118
||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||
Sbjct 73 ACATCAGCATCCTTCAGCTCCAGGAGCGTTGGCTCAATGAGAAAGAGAAGAAGCG-AA-- 129
Query 119 aggaagaagaagaagagagacgccggaaacaacaagctgaggaagagaaaaagatagagg 178
| | ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||
Sbjct 130 A-G--GAAGAAGAAGAGAGACGACGGAAACTACAGGCTGAGGAAGAGAAAAAGATAGAGG 186
Query 179 aagaagatctgaagaaagcggaggaggaggagCGTATGAATCGAAGTAATCGGAAACA-T 237
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
Sbjct 187 AAGAAGATCTGAAGAAAGCGGAGGAGGAGAAGCGTATGAATCGAAGTAATCGGAAGCATT 246
Query 238 TT--G-G---AAA-GAA-ATA-AGAACGGCGGAGAAGCAAGATTCGTTGAGAAGGAGAAA 288
|| | | ||| ||| || || |||||||||||||| ||||||||||||||||||||
Sbjct 247 TTGGGAGAAAAAAGGAATCTATAG-ACGGCGGAGAAGCACGATTCGTTGAGAAGGAGAAA 305
Query 289 CCGGAAGTCACGACGGCGATGGAGAGCTGTGGAGGTGAAGATACGGCGGAGGGATTACCg 348
|||||||||||| |||||| |||||| |||||||||||||| ||||||| |||||||||
Sbjct 306 CCGGAAGTCACGGTGGCGATCGAGAGCGGTGGAGGTGAAGATGCGGCGGATGGATTACCG 365
Query 349 aagaagaagaagaagaa---taagggatctaggaggaaacgatatgatagcaagaagaag 405
||||||||||||||||| ||||||| || |||||||||||||| ||||||||| |||
Sbjct 366 AAGAAGAAGAAGAAGAAGAATAAGGGAGCTTGGAGGAAACGATATAATAGCAAGACGAAT 425
Query 406 aa---tcaagaTATG-GCTGTGGTTGAGGATGTCGTCGATTGTGGTTGTGTATCA--A-T 458
|| ||||||| | |||||||||||||||||| ||||||| |||||||||||| | |
Sbjct 426 AAAAATCAAGATG-GAGCTGTGGTTGAGGATGTCATCGATTGCGGTTGTGTATCATCAAT 484
Query 459 CGCGCCGCCTGAGTCCGTCGTGACGGAGAATGTTACTCCGGTGAAAGATGTGGTTCGAGT 518
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 485 CGTGCCGCCTGAGTCCGTCGTGACGGAGAATAATACTCCGGTGAAAGATGTGGTTCCAGT 544
Query 519 TTATAGGAAGAAAGGAGAAAAAGCGACCAAATCAAAAGAGGTTACGGATGTGA-TGGCCA 577
|||| ||| ||||| |||||||||| |||||| |||| | | | ||||||
Sbjct 545 TTATTGGATGAAAG---------CGACCAAATCTAAAGAGATTACCAAA-TCAATGGCCA 594
Query 578 TGGAAACACCA-TTTGAGAATCT-CACTATCAAAAGAGAAGAGGAAACCAAAAATCTCAA 635
| ||||||| | |||||||| || | ||||||| |||| ||| || |||||| ||||||
Sbjct 595 TAGAAACAC-AGTTTGAGAA-CTTCTCTATCAATAGAG--GAG-AAGCCAAAACTCTCAA 649
Query 636 GACGCAAACCCAAA 649
||| |||||| |||
Sbjct 650 GACACAAACC-AAA 662
Score = 82.4 bits (44), Expect = 6e-15
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 746 AGAAAGAGAGAGCTAATGATGGAATTGCAAGTGGCGTGAAGCCATTAAATGCGTAA 801
|||| ||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 733 AGAACGAGAGAGCTGGTGATGGAATTGCAAGTGGCGTGAAGCCATTTAATGCGTAA 788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5