BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900890

Length=201
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G30984.1 | Symbols:  | other RNA | chr2:13186544-13187253 RE...   289    8e-78
  AT2G30985.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   289    8e-78


> AT2G30984.1 | Symbols:  | other RNA | chr2:13186544-13187253 
REVERSE LENGTH=710
Length=710

 Score =  289 bits (156),  Expect = 8e-78
 Identities = 186/201 (93%), Gaps = 0/201 (0%)
 Strand=Plus/Plus

Query  1    ATGAAAGAAGCTATTGCTTTTGGGGATGGTTTGTTCTTGATCTTCATGTTTCTTTTGTCT  60
            ||||||||||||  ||||||||||| || |||||||||||| |||||||||||| |||| 
Sbjct  70   ATGAAAGAAGCTGCTGCTTTTGGGGGTGTTTTGTTCTTGATTTTCATGTTTCTTCTGTCG  129

Query  61   TTGTTACTTGTAACCATGGCGGTATTTGCTTGCTCCAAAAAGAAGGAAAAGAAGAAGGAT  120
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  130  TTGTTACTTGTAACCATGGCCGTATTTGCTTGCTCCAAAAAGAAGGAAAAGAAGAAGGAT  189

Query  121  TCAGGTAGCTGTTGCTGCTGTAAAGGTGGCGGTTGTGGCGGTTGCTGTGGTGATGGTGGT  180
            ||| || |||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct  190  TCAAGTTGCTGTTGCTGCTGTAAAGGTGGCGTTTTTGGCGGTTGCAGTGGTGATGGTGGT  249

Query  181  GGAGGAGGAGGAGGTTGTTAG  201
            ||||||||||| ||||| |||
Sbjct  250  GGAGGAGGAGGGGGTTGCTAG  270


> AT2G30985.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:13186716-13187200 
FORWARD LENGTH=485
Length=485

 Score =  289 bits (156),  Expect = 8e-78
 Identities = 186/201 (93%), Gaps = 0/201 (0%)
 Strand=Plus/Minus

Query  1    ATGAAAGAAGCTATTGCTTTTGGGGATGGTTTGTTCTTGATCTTCATGTTTCTTTTGTCT  60
            ||||||||||||  ||||||||||| || |||||||||||| |||||||||||| |||| 
Sbjct  469  ATGAAAGAAGCTGCTGCTTTTGGGGGTGTTTTGTTCTTGATTTTCATGTTTCTTCTGTCG  410

Query  61   TTGTTACTTGTAACCATGGCGGTATTTGCTTGCTCCAAAAAGAAGGAAAAGAAGAAGGAT  120
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  409  TTGTTACTTGTAACCATGGCCGTATTTGCTTGCTCCAAAAAGAAGGAAAAGAAGAAGGAT  350

Query  121  TCAGGTAGCTGTTGCTGCTGTAAAGGTGGCGGTTGTGGCGGTTGCTGTGGTGATGGTGGT  180
            ||| || |||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct  349  TCAAGTTGCTGTTGCTGCTGTAAAGGTGGCGTTTTTGGCGGTTGCAGTGGTGATGGTGGT  290

Query  181  GGAGGAGGAGGAGGTTGTTAG  201
            ||||||||||| ||||| |||
Sbjct  289  GGAGGAGGAGGGGGTTGCTAG  269



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8953640478


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5