BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900904

Length=489
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31050.1 | Symbols:  | Cupredoxin superfamily protein | chr2...   630    3e-180


> AT2G31050.1 | Symbols:  | Cupredoxin superfamily protein | chr2:13212150-13212752 
FORWARD LENGTH=603
Length=603

 Score =  630 bits (341),  Expect = 3e-180
 Identities = 442/491 (90%), Gaps = 5/491 (1%)
 Strand=Plus/Plus

Query  3    GATGATAAGCGTCAATTACGAGAGATGGGCCTCTTCAAGAACTTTTCATGTCGGAGACTC  62
            ||| || |||||||| ||||||| |||||| ||| ||| ||||||||| || ||||||||
Sbjct  114  GATTATGAGCGTCAACTACGAGACATGGGCATCTACAATAACTTTTCAAGTTGGAGACTC  173

Query  63   TTTGGTCTTCAAATACAACAAAGATTTTCACGACGTCACTGAAGTCACTCACAATGATTT  122
            |||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| 
Sbjct  174  TTTGGTCTTCAAATACAACAAAGACTTCCACGACGTCACCGAAGTCACTCACAATGATTA  233

Query  123  CAAGCTGTGTGAACCGTCTAAACCGCTAACGAGATACGAGACCGGATCTGATACCGTCAT  182
            | || ||||||||||||| ||||||||| | |||||||||||||| ||||||| ||||||
Sbjct  234  CGAGATGTGTGAACCGTCCAAACCGCTAGCAAGATACGAGACCGGGTCTGATATCGTCAT  293

Query  183  TCTAACCAAACCAGGACTCCAACACTTCATATGCGGATTTCCAAGTCACTGCGACATGGG  242
            |||||||||||| |||||||||||||||||||||||||||||  ||||||| ||||||||
Sbjct  294  TCTAACCAAACCGGGACTCCAACACTTCATATGCGGATTTCCTGGTCACTGTGACATGGG  353

Query  243  ACAAAAGCTTCAAATCCATGTATTACCGGCCTCTTTGGGACATGTCGCTGCTCCGGTTCC  302
            ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||
Sbjct  354  ACAAAAGCTTCAAATCCATGTATTACCAGCCTCATTGGGACCTGTCGCTGCTCCGGTTCC  413

Query  303  TGGACCCGTCCGATCACTAAGCTCTTTGACGTCTCCTTCACCGTCTCGGTTGACTGATTC  362
            ||||||||||||| ||| |||||||||  |||||||||||| ||||| |||| |||| ||
Sbjct  414  TGGACCCGTCCGACCACCAAGCTCTTTTTCGTCTCCTTCACAGTCTCCGTTGGCTGAGTC  473

Query  363  ACCGGTTAATAATGTTCCA---CAGTATCAGATGGGACCATCACCAGCTCCACTTAGCGT  419
            |||||||||| ||| ||||   ||||||||||||||||||||||||||||||| ||| | 
Sbjct  474  ACCGGTTAATCATGCTCCAGTACAGTATCAGATGGGACCATCACCAGCTCCACATAGTGC  533

Query  420  AGCTTCATACTCTAGTGTTTGGATCGGACTCTGCTTCCTTCCTTTACTTTCTCTTT-TCA  478
            ||||||| |||||| ||||||||| ||||||||||||||||||||||||||| ||  |||
Sbjct  534  AGCTTCAAACTCTAATGTTTGGATTGGACTCTGCTTCCTTCCTTTACTTTCT-TTGCTCA  592

Query  479  TCTTAGTTTGA  489
            |||||||||||
Sbjct  593  TCTTAGTTTGA  603



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23308644208


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5