BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900923
Length=753
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31180.1 | Symbols: ATMYB14, MYB14AT, MYB14 | myb domain pro... 1138 0.0
> AT2G31180.1 | Symbols: ATMYB14, MYB14AT, MYB14 | myb domain protein
14 | chr2:13286721-13288176 REVERSE LENGTH=836
Length=836
Score = 1138 bits (616), Expect = 0.0
Identities = 711/756 (94%), Gaps = 9/756 (1%)
Strand=Plus/Plus
Query 1 ATGGGAAGAGCACCATGTTGCGAGAAAATGGGGATGAAGAGAGGACCATGGACTCCTGAA 60
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 2 ATGGGAAGAGCACCATGTTGTGAGAAAATGGGGGTGAAGAGAGGACCATGGACTCCTGAA 61
Query 61 GAAGATCAAATCTTGATCAATTATATTCATCTTTATGGTCATTCTAATTGGCGAGCTCTC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GAAGATCAAATCTTGATCAATTATATTCATCTTTATGGTCATTCTAATTGGCGAGCTCTC 121
Query 121 CCAAAACACGCAGGTTTACTTCGATGTGGGAAAAGTTGCAGACTTCGTTGGATCAATTAT 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 122 CCAAAACACGCAGGTTTACTTAGATGTGGGAAAAGTTGCAGACTTCGTTGGATCAATTAT 181
Query 181 CTGAGGCCAGACATTAAACGTGGCAATTTCACTCCTCAAGAAGAACAAACTATCATCAAT 240
|| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 182 CTTAGACCAGACATTAAACGTGGCAATTTCACTCCTCAAGAAGAACAAACTATTATCAAT 241
Query 241 TTGCATGAAAGCTTAGGCAACAGATGGTCTGCGATTGCTGCAAAGTTGCCGGGACGAACC 300
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 242 CTGCATGAAAGCTTAGGCAACAGATGGTCTGCGATTGCTGCAAAATTGCCGGGACGAACC 301
Query 301 GACAATGAAATAAAAAATGTTTGGCACACTCATTTGAAGAAAAGAATCAGCAAAAATATT 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 302 GACAATGAAATAAAAAATGTTTGGCACACTCATTTGAAGAAAAGACTCAGCAAAAATCT- 360
Query 361 CAAAACAATGGCGGAGACACCAAAGACATTAACGGAATTAACGAGACCGCACACGTAGAC 420
||| |||||||||||||||||||||| |||||||||||||||||||| || | | ||||
Sbjct 361 -AAA-CAATGGCGGAGACACCAAAGACGTTAACGGAATTAACGAGACCACAAATGAAGAC 418
Query 421 AAAGAATCGGTGATTGTCGACACAGCCTCTCTACAACAATTTTCTAGTAGTATTACGACA 480
|||| ||| ||||| ||||||||||||||| ||||||||||||||| ||||||||| |||
Sbjct 419 AAAGGATCTGTGATAGTCGACACAGCCTCTTTACAACAATTTTCTAATAGTATTACAACA 478
Query 481 TTTGATATTTCAAATGATAGCAAGGACGATGTTATGTCGTACGAGGATATTTCTGCCTTG 540
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 479 TTTGATATTTCAAATGATAACAAGGACGATATTATGTCGTACGAGGATATTTCTGCCTTG 538
Query 541 ATAAATGATAGTTTTTGGTCGGACGTCGTATCAGTAGATAACTTC-AACA-GCAATGAGA 598
||| ||||||||||||||||||||||| |||| |||||||| ||| || | | |||||||
Sbjct 539 ATAGATGATAGTTTTTGGTCGGACGTCATATCGGTAGATAA-TTCGAATAAG-AATGAGA 596
Query 599 AGAAAATAGAGGATTGGGAAGGGTTGATCGATAAGAAGG-GTAAGAAATGTAGCTATAAT 657
|||| ||||||||||||||||| |||||||||| ||| |||| ||||||||||||| |
Sbjct 597 AGAAGATAGAGGATTGGGAAGGATTGATCGATA-GAAATAGTAAAAAATGTAGCTATAGT 655
Query 658 AATTCGAAGTTGTATAATGATGACATGGAGTTTTGGTTTGAGGTTTTCACTAGTAATCGT 717
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 656 AATTCTAAGTTGTATAATGATGACATGGAGTTTTGGTTTGATGTTTTCACTAGTAATCGT 715
Query 718 AGAATTGAGGAATTTTCCGACATACCAGAGTTTTAA 753
|||||||||||||||||||||||||| |||||||||
Sbjct 716 AGAATTGAGGAATTTTCCGACATACCCGAGTTTTAA 751
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36570459016
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5