BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900951
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31425.1 | Symbols: | Plant invertase/pectin methylesterase... 776 0.0
> AT2G31425.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr2:13394721-13395720 FORWARD
LENGTH=736
Length=736
Score = 776 bits (420), Expect = 0.0
Identities = 521/569 (92%), Gaps = 10/569 (2%)
Strand=Plus/Plus
Query 1 ATGGCCAAAATG-CTAATAAAACACaaaaaaaTTCTTCCATTGTTGTTAT-TGTTAGTGC 58
|||||||||||| | ||||| ||||| || |||||| | ||||||||| | |||||||
Sbjct 36 ATGGCCAAAATGAC-AATAACACACATGAAGTTTCTTCAACTGTTGTTATCT-TTAGTGC 93
Query 59 TCTTTGCATTCCCAATGTCAAATACAATGCCAATCACAGACGTACACAATTTTTGCAAGG 118
|||||| |||| ||||||||||| ||||||||||| |||||||||| |||||||||||||
Sbjct 94 TCTTTGTATTCTCAATGTCAAATGCAATGCCAATCTCAGACGTACATAATTTTTGCAAGG 153
Query 119 AAACGTTTGAAGTAGATTTCTGCCTGAAATACATTGGGTCGGACCAACGTATGGTAGCCG 178
|||||||||||||||| |||||| |||||||||||||||||||||||||| | |||||||
Sbjct 154 AAACGTTTGAAGTAGAATTCTGCATGAAATACATTGGGTCGGACCAACGTCTCGTAGCCG 213
Query 179 CACGCGACTTCAGTGACATGTTTTTAATTGCGATATCTGAGACCCAAATTCAAGTGACCA 238
|||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||
Sbjct 214 CACGCGACTTCAGTGACATGCTTTTAATTCCGATATCTGAGACTCAAATTCAAGTGACCA 273
Query 239 ATGCAATTACACATATCAACAATATCCGCCAAA-GTTTAAATGATC-CGCTTGGGAAGAA 296
||||||| ||||| ||||||||||||||||||| |||| ||||| | ||||||| |||||
Sbjct 274 ATGCAATCACACAAATCAACAATATCCGCCAAAGGTTT-AATGA-CACGCTTGGAAAGAA 331
Query 297 TCGGATCGGTGTATGCGAGGAAAAATACGAG-GTCGCGGCCACTAGTTTTCACAAGGCTT 355
|||||||| | |||||||||||||||||||| | ||||| ||||||||||||||||||||
Sbjct 332 TCGGATCGCTCTATGCGAGGAAAAATACGAGAG-CGCGGGCACTAGTTTTCACAAGGCTT 390
Query 356 GGGAAGTTGGACAGAAAAAGTCAAATTCATCAACGGACCGTATGGAGATAACCAGAAGCA 415
||||||| ||||||||||||||||||||||| ||||||| |||||| |||||| ||| ||
Sbjct 391 GGGAAGTCGGACAGAAAAAGTCAAATTCATCGACGGACCATATGGAAATAACCCGAAACA 450
Query 416 CGCAAGCTGGCTTTGATGCTGTGTGTGAGTGCGAAGACGAATGGTCAAAGCATGGTCCGA 475
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 451 CGCAAGCTGGCTTTGATGCTGTGTGCGAGTGCGAAGACGAATGGGCAAAGCATGGTCCGA 510
Query 476 GACAAGAGTCTCCTCTCACTTTCTATTACCATAATGTTCTAAAACTATGTCAAATTACTC 535
||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 511 AACAAGAGTCTCCTCTCACTTTCTATTACCATAACGTTCTGAAACTATGCCAAATTACTC 570
Query 536 GTCTTATTATCAGCAAGCTTGAGGCTTAA 564
|||||||||||||||||||| ||||||||
Sbjct 571 GTCTTATTATCAGCAAGCTTTAGGCTTAA 599
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27076205233
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5