BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900954
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31450.1 | Symbols: ATNTH1 | DNA glycosylase superfamily pro... 1668 0.0
> AT2G31450.1 | Symbols: ATNTH1 | DNA glycosylase superfamily protein
| chr2:13401132-13404177 REVERSE LENGTH=1369
Length=1369
Score = 1668 bits (903), Expect = 0.0
Identities = 1019/1073 (95%), Gaps = 16/1073 (1%)
Strand=Plus/Plus
Query 1 ATGAATCGCCAAATTCACGGAGCTGTATCTTCTTCTTCTAAACCA-ATCTCCTCAAAAAC 59
|||| |||||||||||||||||||||| ||||||||| || || ||||||| ||||||
Sbjct 119 ATGAGTCGCCAAATTCACGGAGCTGTA---TCTTCTTCT-AAGCACATCTCCTTAAAAAC 174
Query 60 CCAACATCCTCTCTCCGATTCCAACT-----C-AGCCAATGGAGCTTCTGGGTCGGTGAC 113
|||||| || ||||| |||||||||| | |||| |||||||||||||||||| |||
Sbjct 175 CCAACACCCCCTCTCAGATTCCAACTCAGAACTAGCCTATGGAGCTTCTGGGTCGGAGAC 234
Query 114 TCGAGTGTATACCCGGAAGAAAAGGCTAAAGCAGGAAGCTTTGGAGCCTCTGGAGATAA- 172
|||||||||||||||||| |||||||||||||||||| |||| ||||||||||||| ||
Sbjct 235 TCGAGTGTATACCCGGAAAAAAAGGCTAAAGCAGGAACCTTTTGAGCCTCTGGAGA-AAT 293
Query 173 ATCCCGGCAAAGGAGTCAATACCCACAAACAGCTACGTGGTTTACCCGATATAGAAGATT 232
|| ||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 294 ATTCCGGCAAAGGAGTCAATACCCACAAACTG-T--GTGGTTTACCCGATATAGAAGATT 350
Query 233 TTGCTTACAAAAAGACTATTGGATCTCCTTCATCTAGGAGGTCAACGGAAACTAGCATCA 292
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 351 TTGCTTACAAAAAGACTATTGGATCTCCTTCATCTAGCAGGTCAACGGAAACTAGCATCA 410
Query 293 CTGTGACTTCAGTCAAAACAATAGGAAATCCGCCTGAAAACTGGGTAAAAGTGCTCGAGG 352
|||||||||||||||||||| |||| ||||||||||||||||||| ||||||||||||
Sbjct 411 CTGTGACTTCAGTCAAAACAGCAGGATATCCGCCTGAAAACTGGGTCGAAGTGCTCGAGG 470
Query 353 GTATTCGTCAAATGAGATCTTCTGAAGATGCACCAGTTGATTCTATGGGATGTGATAAGG 412
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 471 GTATTCGTCAAATGAGATCTTCTGAAGATGCACCAGTTGATTCTATGGGATGTGATAAAG 530
Query 413 CCGGAAGCTTTCTACCTCCTACGGAAAGAAGATTTGCTGTCTTGCTAGGAGCACTTCTTT 472
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 531 CCGGAAGCTTTCTACCTCCCACGGAAAGAAGATTTGCTGTCTTGCTAGGAGCACTTCTTT 590
Query 473 CAAGTCAGACAAAAGATCAAGTTAATAACGCGGCAATACATCGTCTTCATCAAAACAGCC 532
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 591 CAAGTCAGACAAAAGATCAAGTTAATAACGCGGCAATACATCGTCTTCATCAAAACGGCC 650
Query 533 TTCTTACGCCCGAAGCCGTTGACAAAGCTGATGAATCAACTATAAGAGAATTGATCTATC 592
||||||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 651 TTCTTACTCCCGAAGCGGTTGACAAAGCTGATGAATCAACCATAAAAGAATTGATCTATC 710
Query 593 CGGTTGGATTTTATACAAGGAAGGCTACATATATGAAGAAAATAGCTAGAATTTGCCTAG 652
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 711 CGGTTGGATTTTATACAAGGAAGGCTACCTATATGAAGAAAATAGCTAGAATTTGTCTAG 770
Query 653 TGAAATATAACGGAGACATTCCAAGCTCTTTGGACGACCTGCTGTCTCTTCCAGGGATTG 712
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 TGAAATATGACGGAGACATTCCAAGCTCTTTGGACGACCTGCTGTCTCTTCCAGGGATTG 830
Query 713 GTCCGAAGATGGCCCATCTGATTCTGCATATAGCATGGAATGATGTCCAAGGTATATGTG 772
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 831 GTCCCAAGATGGCCCATCTGATTCTGCATATAGCATGGAATGATGTCCAAGGCATATGTG 890
Query 773 TAGACACACATGTGCATCGCATTTGCAATCGACTTGGTTGGGTGTCTCGTCCAGGAACCA 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TAGACACACATGTGCATCGCATTTGCAATCGACTTGGTTGGGTGTCTCGTCCAGGAACCA 950
Query 833 AACAGAAAACTACATCTCCAGAGGAAACAAGAGTAGCTTTGCAACAATGGCTTCCAAAGG 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 AACAGAAAACTACATCTCCAGAGGAAACAAGAGTAGCTTTGCAACAATGGCTTCCAAAGG 1010
Query 893 AAGAATGGGTTGCCATTAACCCGCTTTTGGTGGGGTTTGGACAAACGATTTGCACACCAT 952
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1011 AAGAATGGGTTGCCATTAACCCGCTTTTGGTGGGGTTTGGACAAATGATTTGCACACCAA 1070
Query 953 TAAGACCTCGCTGCGAAGCTTGCAGTGTCACTAAGCTTTGTCCTGCTGCATTCAAAGAGA 1012
||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||| |
Sbjct 1071 TAAGACCACGCTGCGAAGCCTGCAGTGTCAGTAAGCTTTGTCCTGCTGCATTCAAAGAAA 1130
Query 1013 CATCAAGCCCATCTTCCAAATTGAAGAAATCTAACCGAAGCAAAGAACCATGA 1065
||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1131 CATCAAGCCCATCTTCCAAGTTGAAGAAATCTAACCGAAGCAAAGAACCATGA 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5