BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900966
Length=744
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31620.1 | Symbols: | Receptor-like protein kinase-related ... 573 8e-163
AT3G21965.1 | Symbols: | pseudogene, similar to OJ1058_A12.21,... 171 1e-41
> AT2G31620.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr2:13451991-13452908 REVERSE LENGTH=768
Length=768
Score = 573 bits (310), Expect = 8e-163
Identities = 370/399 (93%), Gaps = 4/399 (1%)
Strand=Plus/Plus
Query 342 CGACAACTGTTTTCTCTACATTTCCGAGATATATACCTTTC-AGAAGGTCGATTACAAGC 400
||||||||||||||||||||||||||||||||||||| | | ||||| | |||| |||||
Sbjct 366 CGACAACTGTTTTCTCTACATTTCCGAGATATATACC-TACGAGAAGATTGATTTCAAGC 424
Query 401 ACTATTTGTATTTGCACAATGCCAAAGATGTGAACGGCAATACAAAGTTGTTCAATAAGA 460
||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||
Sbjct 425 ACTATTTGTATTTGCACAATGCCAAAGATGTGAGCGGCAATAAAAAGTTGTTCAACAAGA 484
Query 461 ACACAAGGGCTCTCCTATATAAGCTGAAGGAGAAAACAACTCGTAAAGAACAAGAGCCTT 520
|||||| |||||||||| ||||||| ||||||||| ||| ||||||||||||||||||||
Sbjct 485 ACACAAAGGCTCTCCTAGATAAGCTCAAGGAGAAAGCAATTCGTAAAGAACAAGAGCCTT 544
Query 521 ACACAAAAGACTACATGTATGCGA-CGGGGGAAGAAAGTCTCGGGACGATGAAATTGTAC 579
|||||| ||||||||||||||| | ||||||| |||||||||||||||| |||||||||
Sbjct 545 ACACAAGAGACTACATGTATGC-AGCGGGGGAGGAAAGTCTCGGGACGACGAAATTGTAT 603
Query 580 GGAATGATGCAGTGTACACAAGACTTATCGGTTAAAAATTGCAGTGTGTGTTTGGATTCG 639
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 604 GGGATGATGCAGTGTACACAAGACTTATCAGTTAAAAATTGCAGTGTGTGTTTGGATTCG 663
Query 640 ATTATTGCGAAGCTTCCCAGGTGTTGCAACGGTAAACAAGGAGGAAGAGTTTTGAATCCG 699
|||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 664 ATTATTGCAAAGCTTCCCAGATGCTGCAACGGTAAACAAGGAGGAAGAGTTTTGAATCCG 723
Query 700 AGTTGTACTTTTAGATATGAGCTTTACCCTTTTGTAAAA 738
|||||||||||||| || ||||| || ||||||||||||
Sbjct 724 AGTTGTACTTTTAGGTACGAGCTCTATCCTTTTGTAAAA 762
Score = 440 bits (238), Expect = 8e-123
Identities = 296/323 (92%), Gaps = 8/323 (2%)
Strand=Plus/Plus
Query 10 ATGTCTTCTTCCTCTGTATCGATCTCTATCTTGGCCGTGGTGGCCATGCAACTCTCTTTT 69
|||| ||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||
Sbjct 1 ATGTTTTCTTCCTCTGTATCCATCTCTATCTTGGTCGTGGTGGCCATGCAATTCTCTTTT 60
Query 70 ATGCA-AAGTGTTTTGTCCCTAAACCAGACCAATGAGTATCTGCAACACATATGCATCAA 128
|| || || ||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 61 ATCCACAA-TGTTTTGTCCCTAAATCAGACCAATTCGTATCTGCAACACATATGCATCAA 119
Query 129 CAGTGAAGGAACATACAAG-CAGAAGAGTTCATACGAGAGC-GAACTCAAAGATCATCTC 186
||||||||||| ||||||| || |||| ||||||||||||| || |||||||||||||||
Sbjct 120 CAGTGAAGGAAAATACAAGGCA-AAGAATTCATACGAGAGCAGA-CTCAAAGATCATCTC 177
Query 187 GACATTATGTCTAACATTCTAGACTACGGTTTCGTCCACGGTGTAGGTGGTGCGGGTTCC 246
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||| |||
Sbjct 178 GACAGTATGTCTAACATTCTAGACTACGGTTTCATCCACGGTGTTGGTGGTGCGGATTCT 237
Query 247 AAG-ACCTACTACATCAAGGTCCTATGTCGGGGCGATGCCTCCGAATCCAAGTGCCGCTC 305
| | |||||||||||||||| || ||||||||| ||||||||||||||||||||||||||
Sbjct 238 A-GTACCTACTACATCAAGGCCCAATGTCGGGGAGATGCCTCCGAATCCAAGTGCCGCTC 296
Query 306 TTGCCTCTATACCGCCTTCTCTG 328
|||||||| ||||||||||||||
Sbjct 297 TTGCCTCTTTACCGCCTTCTCTG 319
> AT3G21965.1 | Symbols: | pseudogene, similar to OJ1058_A12.21,
contains Pfam profile: PF01657 Domain of unknown function;
blastp match of 34% identity and 2.8e-22 P-value to GP|28411826|dbj|BAC57301.1||AP003863
OJ1058_A12.21 {Oryza sativa (japonica
cultivar-group)} | chr3:7740234-7741147 FORWARD LENGTH=914
Length=914
Score = 171 bits (92), Expect = 1e-41
Identities = 249/320 (78%), Gaps = 30/320 (9%)
Strand=Plus/Plus
Query 20 CCTCTGTATCGATCTCTATCTTGGCCGTGGTGGCCATGCAACT-CTCTTTTATGCAAAGT 78
|||| || ||| ||| | |||| ||| ||||| |||||||||| || |||||||||||||
Sbjct 30 CCTC-GTTTCGGTCTATGTCTTCGCCATGGTGACCATGCAACTCCT-TTTTATGCAAAGT 87
Query 79 GTTTTGTCCCTAAACCAGACCAATGAGTATCTGCAAC-ACATATGCATCAACAG-TGAAG 136
||||||||||||||||||||||||| ||||||| ||| ||||||||||||| || |||||
Sbjct 88 GTTTTGTCCCTAAACCAGACCAATGCGTATCTG-AACCACATATGCATCAA-AGGTGAAG 145
Query 137 GAACA-TACAAGCAGAAGAGTTCATACGAGAGCGAAC--TCAAA-GA-TCATCTCGA-CA 190
| | | | |||| | |||||| ||||| || || | ||||| | ||||| || ||
Sbjct 146 GGATAGT-CAAGG-G--GAGTTCGTACGA-AG-GATCAGTCAAAAGTGTCATC--GATCA 197
Query 191 TTATGTCTAACAT-TCTAGACTACGGTTTCGTCCACGGTGTAGGTGGTGCGGGTTCCAAG 249
| ||||| ||| | ||| ||||| ||||| ||| |||| | ||| ||| || |||
Sbjct 198 T-ATGTC-AACCTATCTTGACTATGGTTTTGTCAACGGCGCCGGTAGTGATGGCCCCACT 255
Query 250 ACCTA-CTACATCAAGGTCCTA-TGTCGGGGCG-ATGCCTCCGAATCCAAGTGCCGCTCT 306
| || ||| ||| ||| | || |||| || ||||||| |||||||| |||||||||
Sbjct 256 AA-TATCTATGCCAAACTCC-AGTGCCGGG-CGGATGCCTCTGAATCCAAATGCCGCTCT 312
Query 307 TGCCTCTATACCGCCTTCTC 326
|||||| |||||||||||
Sbjct 313 TGCCTCGCCACCGCCTTCTC 332
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36118351693
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5