BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900975
Length=618
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31865.2 | Symbols: PARG2 | poly(ADP-ribose) glycohydrolase ... 174 8e-43
> AT2G31865.2 | Symbols: PARG2 | poly(ADP-ribose) glycohydrolase
2 | chr2:13546596-13549536 REVERSE LENGTH=1857
Length=1857
Score = 174 bits (94), Expect = 8e-43
Identities = 114/124 (92%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 12 GAGGGCATATCTTAGGTCAATTCTTCAGTATTTGCCTCTTGTGGCTAACTCTTCATCTCT 71
||||||| |||||||||||||||||||||||||||||||||||||| | |||||||| ||
Sbjct 73 GAGGGCAGATCTTAGGTCAATTCTTCAGTATTTGCCTCTTGTGGCTCAGTCTTCATCACT 132
Query 72 AGTTTGGCCACCACCTGTTGAAGAAGAGCTCCAAACAATGTCCAGAGGACCAAGTGAGTC 131
|||||||||||| |||| |||||||||||||||||||| || |||||||| ||||||||
Sbjct 133 AGTTTGGCCACCTTCTGTCGAAGAAGAGCTCCAAACAATATCTAGAGGACCGAGTGAGTC 192
Query 132 AATG 135
||||
Sbjct 193 AATG 196
Score = 132 bits (71), Expect = 5e-30
Identities = 83/88 (94%), Gaps = 3/88 (3%)
Strand=Plus/Plus
Query 466 AAAAAGCTAGTTGAGTATTCTTCAGAGAGGCTCAGCAGAAGAACATGGCTTGGCTTCTTC 525
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574 AAAAAACTAGTTGAGTATTCTTCAGAGAGGCTCAGCAGAAGAACATGGCTTGGCTTCTTC 1633
Query 526 TCGTGGCTCATAAGTACGTCACTGTCTA 553
||||||||||| | || ||||||||||
Sbjct 1634 TCGTGGCTCAT--G-ACCTCACTGTCTA 1658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29788849171
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5