BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg900990

Length=1206
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G31860.1 | Symbols:  | pseudogene, poly (ADP-ribose) glycohy...   316    2e-85


> AT2G31860.1 | Symbols:  | pseudogene, poly (ADP-ribose) glycohydrolase, 
putative, contains Pfam domain, PF05028: poly (ADP-ribose) 
glycohydrolase (PARG); blastp match of 59% identity 
and 1.4e-19 P-value to EGAD|134505|143482 114E2.c protein 
{Drosophila melanogaster} | chr2:13542483-13545266 REVERSE LENGTH=2784
Length=2784

 Score =  316 bits (171),  Expect = 2e-85
 Identities = 184/190 (97%), Gaps = 2/190 (1%)
 Strand=Plus/Plus

Query  248  AGAGAATGTCGAAAGAAGAATCAAGCAGATGGTTTAACGAGGTTTTACCTGAAATGGCTT  307
            ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct  332  AGAGAATGTCGAAAGAAGAATCAAGCAGATGGTTTAACGAGTTTTTACCTGCAATGGCTT  391

Query  308  GTCTTCTTCTGAGATTCCCATCTCTCTTGGAACT-ACACTATCTAAATTCAGACAATCTC  366
            |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct  392  GTCTTCTTCTGAGATTCCCATCTCTCTTGGAA-TCACACTATCTAAATTCAGACAATCTC  450

Query  367  ATCAATGGAACCAAAACCGGTCTTCGTGTCTTAGGCCCCAACAAAGCCGGCATTGTGTTT  426
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| 
Sbjct  451  ATCAATGGAACCAAAACCGGTCTTCGTGTCTTAGTCCCCAACAAAGCCGGCATTGTGTTC  510

Query  427  CTCAGCCAGG  436
            ||||||||||
Sbjct  511  CTCAGCCAGG  520


 Score =  303 bits (164),  Expect = 2e-81
 Identities = 196/211 (93%), Gaps = 3/211 (1%)
 Strand=Plus/Plus

Query  532  CTATT-CGGGAGCCTAATCAACACGGGACA-AAACGAGCATCAAGAGAACAAGATAAAGT  589
            ||||| | |||||||||||||||||||| | ||| |||||||||||||||||||||||||
Sbjct  765  CTATTGCAGGAGCCTAATCAACACGGGA-AGAAATGAGCATCAAGAGAACAAGATAAAGT  823

Query  590  GCATAATTCATTACTTCCAAAGGCTATCTTCATGTATCTCTCCTGGATTTGTCTCATTCG  649
            ||||||||||||||||||| |||||||||||| |||||||||| || || ||||||||||
Sbjct  824  GCATAATTCATTACTTCCAGAGGCTATCTTCAAGTATCTCTCCAGGGTTCGTCTCATTCG  883

Query  650  AACGAAAGATTCTCTCTTTAGAACAAGGTTCTTCTTGTCTTGATGAAGGCTTTTGGAGAA  709
            ||||||||||||||||||||||||||| |||||||  |||||||||||| |||||| |||
Sbjct  884  AACGAAAGATTCTCTCTTTAGAACAAGATTCTTCTACTCTTGATGAAGGGTTTTGGGGAA  943

Query  710  AATCTACTGTCAATCTCTGCCCTGTTGAGGT  740
            |||||||||||||||||||||||||||||||
Sbjct  944  AATCTACTGTCAATCTCTGCCCTGTTGAGGT  974


 Score =  270 bits (146),  Expect = 2e-71
 Identities = 166/176 (94%), Gaps = 0/176 (0%)
 Strand=Plus/Plus

Query  1027  AGGGAGACCAATAAGGCTCTATGTGGTTTCCTTCACGTCTGCAAGAAGCAGGGCAACGCG  1086
             ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
Sbjct  1654  AGGGAGACCAATAAGGCTCTATGTGGTTTCCTTCACGTCTGCAAGAATCAGAGCAACGGG  1713

Query  1087  CAATGCATAGATCATGAAGATGGAGTCGGTGTTGCTACAGGGAATTGGGGATGTGGTGCT  1146
             || || ||||||||||||||||| |||||||| | |||||||||||||||||||||||||
Sbjct  1714  CAGTGTATAGATCATGAAGATGGGGTCGGTGTCGTTACAGGGAATTGGGGATGTGGTGCT  1773

Query  1147  TATGGTGGAGATCCTGAGCTCAAGTCTCTTCTTCAGTGGCTTGCTGTTTCACAGGT  1202
             ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  1774  TATGGTGGAGATCCTGAGCTCAAGTCTCTTCTTCAATGGCTTGCGGTTTCACAGGT  1829


 Score =  209 bits (113),  Expect = 4e-53
 Identities = 119/122 (98%), Gaps = 0/122 (0%)
 Strand=Plus/Plus

Query  841   CAGGAAGAGATTAGATTTATGATCAATCCAGAATTGATCGTTGGTATGCTCTTCTTACCA  900
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct  1231  CAGGAAGAGATTAGATTCATGATCAATCCAGAATTGATCGTTGGTATGCTCTTTTTACCA  1290

Query  901   ACCATGGAAGTCACTGAAGCCATTGAAGTTGTTGGTGCAGAAAGATTCTCTCATTACACA  960
             |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  1291  ACCATGGAAGTCACTGAAGCCATTGAAGTTGTTGGTGCAGAAAGATTCTCTCTTTACACA  1350

Query  961   GG  962
             ||
Sbjct  1351  GG  1352


 Score =  189 bits (102),  Expect = 5e-47
 Identities = 106/108 (98%), Gaps = 0/108 (0%)
 Strand=Plus/Plus

Query  433  CAGGAACTTATAGGAGCTTTGCTTTCATGTTCTTTCTTCTGTTTGTTTCCTGTCGATGAT  492
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  600  CAGGAACTTATAGGAGCTTTGCTTTCATGTTCTTTCTTCTGTTTGTTCCCTGTCGATGAT  659

Query  493  AGAGGCTCGAATCATCTTCCAATCATCAATTTCGACAAACTATTCGGG  540
            |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  660  AGAGGCTCAAATCATCTTCCAATCATCAATTTCGACAAACTATTCGGG  707


 Score =  172 bits (93),  Expect = 5e-42
 Identities = 103/108 (95%), Gaps = 0/108 (0%)
 Strand=Plus/Plus

Query  737   AGGTTCATACTTATGGTTTGATCGAGGATCATAGCGTTGAAGCTCTTGAAGTTGACTTTG  796
             |||||| ||||| |||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct  1049  AGGTTCGTACTTCTGGTTTGATCGAGGATCAAAGCGTAGAAGCTCTTGAAGTTGACTTTG  1108

Query  797   CCAATAAGAACTTAGGAGGTGGCGCTCTTCGCAAGGGATGTGTCCAGG  844
             |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1109  CCAACAAGAACTTAGGAGGTGGCGCTCTTCGCAAGGGATGTGTCCAGG  1156


 Score =  115 bits (62),  Expect = 9e-25
 Identities = 66/68 (97%), Gaps = 0/68 (0%)
 Strand=Plus/Plus

Query  962   GATATTCATCTTCATTTCGGTTTTCTGGTGACTACATTGATACAAAGGAAACAGATGTTT  1021
             ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  1438  GATATTCATCTTCGTTTCGGTTTTCCGGTGACTACATTGATACAAAGGAAACAGATGTTT  1497

Query  1022  TCGGAAGG  1029
             ||||||||
Sbjct  1498  TCGGAAGG  1505



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 59236643100


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5