BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900997
Length=2211
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31910.1 | Symbols: ATCHX21, CHX21 | cation/H+ exchanger 21 ... 3258 0.0
> AT2G31910.1 | Symbols: ATCHX21, CHX21 | cation/H+ exchanger 21
| chr2:13571044-13574019 FORWARD LENGTH=2499
Length=2499
Score = 3258 bits (1764), Expect = 0.0
Identities = 2052/2194 (94%), Gaps = 7/2194 (0%)
Strand=Plus/Plus
Query 1 ATGGTTCTCGAGACGTTCGCAAACTTAGCTCTCGTTTACAACATTTTCCTCCTCGGTCTC 60
||| |||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 292 ATGCTTCTTGAGACATTCGCAAACTTAGCTCTCGTTTACAACGTTTTCCTCCTCGGTCTC 351
Query 61 GGCATGGACTTGAGGATGATAAAGATCAAAGACACCAAACCAGTGATCATAGCCATTGTT 120
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 352 GGCTTGGACTTGAGGATGATAAAGATCAAAGACATCAAACCAGTGATCATAGCCATTGTT 411
Query 121 GGCCTCCTTGTGGCTTTACTTGCCGGTGCTGGCTTTTACTACC-TCCCGGGTAACGGAGA 179
|||||||||| |||||||||||||||||||||||| ||||||| |||| ||||||||||
Sbjct 412 GGCCTCCTTGCGGCTTTACTTGCCGGTGCTGGCTTATACTACCTTCCC-AGTAACGGAGA 470
Query 180 CCCCGACAAAATCCTAGCAGGTTGTGTTTACTGGTCGATCGCATTTGGCTGTACAAATTT 239
||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 471 GGCCGACAAAATCCTAGCAGGTTGTATGTACTGGTCGATCGCATTTGGCTGTACAAATTT 530
Query 240 CCCCGATCTTGCTAGGATTCTTGCGGATCTCAAGCTCTTGCGTTCGGATATGGGACATAC 299
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 531 CCCTGATCTTGCTAGGATTCTTGCGGATCTCAAGCTCTTGCGTACGGATATGGGACATAC 590
Query 300 CGCAATGTGTGCAGCCATTATTACTGATTTGTGCACTTGGATTCTCTTCATTCTTGGAAT 359
||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||
Sbjct 591 TGCAATGTGTGCAGCCGTTGTTACTGATTTGTGCACTTGGATTCTCTTCATTTTTGGAAT 650
Query 360 GGCGAGTTTTTCCAAAGCTGGTCTACGGAACGAAATGTTGCCATACTCATTAGTATCAAC 419
||||| |||||||||| ||||| |||| ||||||||||||||||||||||||| ||||||
Sbjct 651 GGCGATTTTTTCCAAATCTGGTGTACGCAACGAAATGTTGCCATACTCATTAGCATCAAC 710
Query 420 CACAGCTTTTATCATTCTCTGCTACTTTGTGATCCATCCTGGAGTGGCTTGGGCCTTCAA 479
|| ||||||| || |||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 711 CATAGCTTTTGTCCTTCTCTGCTACTTTGTGATCCAACCTGGAGTGGCTTGGATCTTCAA 770
Query 480 CAACACCGTCAAAGGAGGTCAAGTAGGAGACACTCACGTATGGTTCACTCTCGCCGGAGT 539
|||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| |||||
Sbjct 771 CAACACCGTCGAAGGAGGTCAAGTGGGAGACACTCACGTATGGTACACTCTCGCTGGAGT 830
Query 540 CCTTATTTGCAGCTTAATCACCGAAGTATTTGGTGTTCACTCAATTACCGGAGCATTCTT 599
| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 831 CATTATTTGCAGCTTAATCACCGAAGTATGTGGGGTTCACTCAATTACCGGAGCATTCTT 890
Query 600 GTTCGGTCTTTCGATCCCTCACGACCACATCATTCGAAAAATGATCGAAGAGAAGCTCCA 659
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 891 GTTCGGTCTATCGATCCCTCATGACCACATCATTCGAAAAATGATCGAAGAGAAGCTCCA 950
Query 660 TGATTTCCTCTCCGGAATACTAATGCCTCTTTTCTACATCATTTGCGGTTTAAGAGCTGA 719
||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 951 CGATTTCCTCTCGGGAATGCTAATGCCTCTTTTCTACATCATCTGCGGTTTAAGAGCTGA 1010
Query 720 TATTAGTTACATGTCCAAGTTCGTGAGCGTTGGAGTGATGGCGTTTGTGATTTCTGCGTC 779
|||| |||||||| || | ||||||||||||| |||||||| |||||| |||||||||
Sbjct 1011 TATTGGTTACATGAACAGGACCGTGAGCGTTGGAATGATGGCGGTTGTGACTTCTGCGTC 1070
Query 780 AATTATGGTGAAGATTTTGTCAACGATTTTTTGCTCCATCTTCTTGCGTATGCCTTTGCG 839
||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 1071 GGTTATGGTGAAGATTTTGTCAACGATGTTTTGCTCCATTTTCTTGCGTATACCTTTGCG 1130
Query 840 TGATGGTTTCGCCATTGGTGCACTTATGAACACCAAGGGAACTATGGCATTAGTCATTCT 899
||||||||| |||||||||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 1131 TGATGGTTTAGCCATTGGTGCACTTATGAATACCAAGGGAACAATGGCACTAGTCATTCT 1190
Query 900 TAATGCAGGAAGAGACTCCAAGGCATTGGACGTTATTATGTACACTCATATGACGTTGGC 959
||||| ||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1191 CAATGCTGGACGAGACACCAAGGCATTGGACGTTATTATGTACACTCATCTGACGTTGGC 1250
Query 960 GTTTCTAGTGATGTCAATGGTGGTGCAGCCACTATTAACCTTTGCTTACAAACCAAAGAA 1019
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1251 GTTTCTAGTGATGTCAATGGTGGTGCAGCCACTATTAGCCATTGCTTACAAACCAAAGAA 1310
Query 1020 GAAGTTGGTTTTCTATAAAAACCGAACCATTCAAAAACACAAAGGAGAGTCAGAGCTTTC 1079
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1311 GAAGTTGATTTTCTATAAAAACCGAACCATTCAAAAACACAAAGGAGAGTCAGAGCTTTG 1370
Query 1080 TGTATTGACATGCGTCCATGTCCTCCCTAACGTCTCTGGCATAACCAATCTATTACAACT 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TGTATTGACATGCGTCCATGTCCTCCCTAACGTCTCTGGCATAACCAATCTATTACAACT 1430
Query 1140 CTCTAACCCGACCAAGAAATATCCTCTTAACGTTTTTGCCATCCACCTGGTCGAGCTAAC 1199
|||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||
Sbjct 1431 CTCTAACCCGACCAAGAAATCTCCTCTTAACGTTTTTGCTATCCACCTAGTCGAGCTAAC 1490
Query 1200 GGGTCGCACCACGGCTTCGTTGCTCATTATGAACGATGAGGCCAAACCAAAAGCTAACTT 1259
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1491 GGGTCGCACCACGGCTTCGTTGCTCATTATGAACGATGAGGCCAAACCGAAAGCTAACTT 1550
Query 1260 TGCTGACCGAATTAGAGCGGAATCTGACCAGATCGCTGAGATGTTCACAGCTCTGGAAGT 1319
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1551 TGCTGACCGAGTTAGAGCGGAATCTGACCAGATCGCTGAGATGTTCACAGCTCTCGAAGT 1610
Query 1320 GAACAACGACGGGATTCTGGTTCAGACCATCACCGCGGTTTCACCTTATGCGACAATGCA 1379
||||||||||||| | ||||||||||||| ||||||||||||||||| || || ||| |
Sbjct 1611 GAACAACGACGGGGTAATGGTTCAGACCATTACCGCGGTTTCACCTTACGCAACGATGGA 1670
Query 1380 CGAAGATATTTGTTCGCTGGCCGAGGATAAACAAGCCAGCTTCATTTTATTGCCTTACCA 1439
|||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1671 CGAAGATATTTGTTTGTTGGCCGAGGATAAACAAGCCTGCTTCATTTTATTGCCTTACCA 1730
Query 1440 TAAGAATATGACGTCAGACGGTCGGTTAAATGAAGGAAACGCGGTGCATGCTGAAATCAA 1499
||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 1731 CAAGAATATGACGTCAGACGGTCGGTTAAATGAAGGTAACGCAGTGCACGCTGAAATCAA 1790
Query 1500 CCAAAACGTTTTGAGCCACGCGCCTTGTTCGGTTGGGATTTTGGTTGACCGTGGCATGAC 1559
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 CCAAAACGTTATGAGCCACGCGCCTTGTTCGGTTGGGATTTTGGTTGACCGTGGCATGAC 1850
Query 1560 GACTGTCCGGTTTGAATCTTTTTTGTTCCAAGGTGAAACCACAAAGAAAGAAATCGCCAT 1619
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 1851 GACTGTCCGGTTTGAATCTTTTATGTTCCAAGGCGAAACCACAAAGAAAGAAATCGCCAT 1910
Query 1620 GCTGTTCGTTGGAGGTCGGGACGACCGAGAGGCTTTGGCTTACGCTTGGAGGATGGTGGG 1679
||| ||| | |||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1911 GCTATTCCTAGGAGGTCGAGACGACAGAGAGGCTTTGGCTTACGCTTGGAGGATGGTGGG 1970
Query 1680 ACAAGAAATGGTTCAACTCACGGTTGTGAGATTCGTCCCAAGCCGGGAAGCTCTAGTCTC 1739
|||||||||||||||||||||||| || |||||||||||||||| ||||||| |||||||
Sbjct 1971 ACAAGAAATGGTTCAACTCACGGTCGTTAGATTCGTCCCAAGCCAGGAAGCTTTAGTCTC 2030
Query 1740 GGCCA---AAGCCGCGGTGGAGTACGAGAAGGATAAACATGTCGATGAAGAATGCATCTA 1796
||| ||||||||| |||||||||||||||||||||||||||||||| | ||||||
Sbjct 2031 AGCCGGGGAAGCCGCGGACGAGTACGAGAAGGATAAACATGTCGATGAAGAGTCCATCTA 2090
Query 1797 CGAGTTTAATTTCAAGACTATGAATGATCCGTCAGTGACTTATATAGAGAAAGTGGTTAA 1856
||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 2091 CGAGTTTAACTTCAAGACTATGAATGATCCATCAGTGACTTATGTAGAGAAAGTGGTTAA 2150
Query 1857 CGA-TGGTCAAGATACGGTCACAGCCATTTTAGAATTGGAAGATAACAATTCTTACGATC 1915
|| ||| ||||| ||| ||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 2151 -GAATGGCCAAGAAACGATCACAGCGATTTTAGAACTGGAAGATAACAATTCTTACGATC 2209
Query 1916 TTTATATTGTAGGAAGAGGCTATCAAGTAGAAACACCTGTGACCGCAGGATTGACAGATT 1975
|||| ||||| |||||||| |||||||||||||||||||||||| |||| ||||||||||
Sbjct 2210 TTTACATTGTGGGAAGAGGATATCAAGTAGAAACACCTGTGACCTCAGGGTTGACAGATT 2269
Query 1976 GGAGTAGTACTCCGGATTTAGGGACTATAGGCGATACATTAATTTCATCAAACTTCACAA 2035
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2270 GGAATAGTACTCCGGATTTAGGGATTATAGGCGATACATTAATTTCATCAAACTTCACAA 2329
Query 2036 TGCAAGCTTCGGTTCTTGTGGTCCAACAATACTCATCTGCTTACAGACAAACGGCAGGTA 2095
|||||||||||||||||||||||||||||||||| |||||| |||||||||| |||| |
Sbjct 2330 TGCAAGCTTCGGTTCTTGTGGTCCAACAATACTCTTCTGCTAACAGACAAACCGCAGAAA 2389
Query 2096 ACAACAATCAAGAACCTGTCCAAGGTGGAGCCAAGACCGCTCATGAGGCTAAGCCTTTTA 2155
|||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 2390 ACAACAATCAAGAACCTGTCCAAGGTAAAGCCAAGACCGATCATGAGGCTACGCCTTTTA 2449
Query 2156 TGGAAGACGAGGATGGTGAAGAAGAACATCAGTA 2189
||||||||||||||| ||||| ||||||||||||
Sbjct 2450 TGGAAGACGAGGATGATGAAGTAGAACATCAGTA 2483
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109688190825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5