BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg900998
Length=1728
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31920.1 | Symbols: | Plant protein of unknown function (DU... 2431 0.0
> AT2G31920.1 | Symbols: | Plant protein of unknown function (DUF936)
| chr2:13574032-13576367 REVERSE LENGTH=1779
Length=1779
Score = 2431 bits (1316), Expect = 0.0
Identities = 1599/1737 (92%), Gaps = 14/1737 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTGCCTCACTCCTGGAGTTCTCTCCAACCTTCTCAATATCGCCGCCGGAAACTCA 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCTTCCCTCACTCCTGGAGTTCTCTCCAACCTTCTCAATATCGCCGCCGGAAACTCA 60
Query 61 CTTTCTTCGCCGCCATTATTGTCCTCACACCGGTCACCACTCCTCCAAGTCATAGAAATC 120
| ||||||||||||||| ||||| || || || |||||||||||||||||||||||||||
Sbjct 61 CCTTCTTCGCCGCCATTGTTGTCTTCTCATCGTTCACCACTCCTCCAAGTCATAGAAATC 120
Query 121 GTTCCTTGTCTCTCTGACGACCAATGGCGTAGCGAAGCATTCTTCGTCAAAGTCTCTGAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GTTCCTTGTCTCTCTGACGACCAATGGCGTAGCGAAGCATTCTTCGTCAAAGTCTCTGAC 180
Query 181 TCTCTCCACGCAGCTTACGTCGCCGTTTCCGCCGGAGATGACGCTGATCTAATACGTTCC 240
|||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct 181 TCTCTCCACGCAGCTTACGTCGCCGTTTCCACCGGTGATGACGCTGATCTGATACGTTCC 240
Query 241 GATGAAATTCAGCTAGGACAGTTTGTTTACATATGCGGTGGTTTACACGTTGAGAAAGGA 300
|||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 241 GATGAAATTCAGCTAGGACAATTCATTTACATATGCGGTGGTTTACACGTCGAGAAAGGA 300
Query 301 TGTCCTGTTCCTGTAATCCGTGGATTGAAACCAGTTCCTAAGCGGAGGATGTGTGTTGGA 360
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 301 TGTCCTGTTCCTGTAATCCGTGGTTTGAAACCAGTCCCTAAGCGGAGGATGTGTGTTGGA 360
Query 361 AACCCTAGCGATCTTTTTTCTAGCGATTTGCTACATTC-TTTTACTCAGGTCTCTGTTTC 419
|||||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||
Sbjct 361 AACCCTAGCGATCTTTATTCTAGCGATTTGCTGC-TTCCTTTTACTCAGGTCTCTGTTTC 419
Query 420 GCCGACGGCCAAGAAGAAGAAGAATCTTGATGAAACAAGGAGATTGAGTTTGGATTCCGC 479
|||||| | | |||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 TCCGACGACGACGAAGAAAAAGAATCTTGTTGAAACAAGGAGATTGAGTTTGGATTCCGC 479
Query 480 GAGAAGGAGTTGTTGGGATCAAACTCCTCCGGTGACCCACCGCCGTGACGCCGCAATGCT 539
|||||||||||||||||||||||||||||||||||| | || |||||||| ||| ||||
Sbjct 480 GAGAAGGAGTTGTTGGGATCAAACTCCTCCGGTGACTCGTCGTCGTGACGCTGCATTGCT 539
Query 540 TCTTTCTTCACCACGTCCTAAATCCAAATTGGTCTTGAGTGATAAGAATCTGCTAAAGAA 599
||||||||||||||||| |||||| ||||||||||||| |||||||| |||||||||||
Sbjct 540 TCTTTCTTCACCACGTCTTAAATCTAAATTGGTCTTGAATGATAAGAGTCTGCTAAAGAT 599
Query 600 TGAATTGCCATCAAAG-AGCTTTAACTGT--AACAC-C-CCTGCTTTAAGAAACAAGAAT 654
||| | ||||||||| | |||||||||| ||| | | ||||| ||||| |||||||||
Sbjct 600 TGAGTCCCCATCAAAGTA-CTTTAACTGTGGAAC-CTCTCCTGCCTTAAGGAACAAGAAT 657
Query 655 GTGGATAAGCCTGCATCACCTATATCAATGGCCAATTCTCCAAAAGATGGTATCAAGTCA 714
|||| |||||||| |||||||||||| ||||| | |||||| ||||||||||||||||||
Sbjct 658 GTGGTTAAGCCTGGATCACCTATATCCATGGCTAGTTCTCCGAAAGATGGTATCAAGTCA 717
Query 715 CCTATACCAAAGCACCTTAACAGCGAAACCCGGGCTTTAAGAAGTAGATATGTGGTGAAG 774
|||||| |||||||||||||| ||||||||| ||||||||||| ||||||||||| |||
Sbjct 718 CCTATATCAAAGCACCTTAACTGCGAAACCCCTGCTTTAAGAAGCAGATATGTGGTCAAG 777
Query 775 CCTGCATCACCTATTTCCATGGCTAGTTCTCCGAAAGATGGTATCAAGTCGTTGTCAAAG 834
|||||||||||||| ||| || |||| ||||| ||||||||||||||||| |||||||||
Sbjct 778 CCTGCATCACCTATATCCGTGACTAGGTCTCCTAAAGATGGTATCAAGTCCTTGTCAAAG 837
Query 835 GCAGTGGCTCCTCCGGTTGCGCTTTTTAAGGTGCCTTCAAGTCACATGACTTGGTCTGAT 894
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 GCAGTGACTCCTCCGGTTGCGCTTTTTAAGGTGCCTTCAAGTCACATGACTTGGTCTGAT 897
Query 895 CAAAGAATCTTATGGAATGGACTCCCAAAAACCATTCAATTTCTCGGAAAGGAAGTTTCA 954
|||||||| | ||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 898 CAAAGAATGTCATGGAGTGGACTCCCAAAAACCATTCAATTGCTCGGAAAGGAAGTTTCA 957
Query 955 TCACATAGGCAAGTAGCAGTTTCGGCAGCAGTAAGCGCACTGGAGGAAGCATCTGCCATG 1014
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 958 TCACATAGGCAAGTAGCAGTTTCGGCAGCAGTAAGTGCACTGGAGGAAGCATCTGCCATG 1017
Query 1015 GAGTCTGTTCTACTCT-GTTTGCAGACCTTTGCCGAGCTGTGTGATTCAACTAAGAAATT 1073
|||||||||||| | | |||||||| |||||||||||||||||||||| |||||||| ||
Sbjct 1018 GAGTCTGTTCTATT-TAGTTTGCAGGCCTTTGCCGAGCTGTGTGATTCTACTAAGAAGTT 1076
Query 1074 ATCTGCAGGACAAGTAGTGAGCC-GATTCTTAGACATCTACCACAGTACACAGAATACAT 1132
|||| | |||||||||||| ||| | ||||| ||||||||||||| ||||||||||||||
Sbjct 1077 ATCTACTGGACAAGTAGTG-GCCCGGTTCTTGGACATCTACCACAATACACAGAATACAT 1135
Query 1133 GCAAAGCGGTCCATCGGTTGCTTACTCAAAATGGAAAGAACGGCTCACGTAGATTAGTAG 1192
|||||||||||||||||||||||||||||||| |||| |||||||| ||||||||||||
Sbjct 1136 GCAAAGCGGTCCATCGGTTGCTTACTCAAAATCGAAACAACGGCTCGTGTAGATTAGTAG 1195
Query 1193 TAAACAAAAATGCAGCATCTTGGGTTCAAACTGCCGTAGTGACCAATTTTTCTCAGTTCA 1252
|||| ||||||||| |||||||||||||| |||| |||||||| ||||||||||||||
Sbjct 1196 TAAATAAAAATGCAACATCTTGGGTTCAAGCTGCGGTAGTGACTGGTTTTTCTCAGTTCA 1255
Query 1253 ATTTATTCAAAGAGCCTGGAAAGAAAGAAGATGCTGCTGATCATCACTACATTGTTATAC 1312
| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 1256 ACTTATTTAAAGAGCCTGGAAAGAAAGGTGATGCTGCTGATCATCACTACATTGTTATGC 1315
Query 1313 AGAACTCATCCGAGAAAATGAAACCCAAGGAGACAACAAGTTCAAGAACCCCGTCTTACA 1372
||||||||||||||||| |||| ||||||||||||||||||||||||||||| || ||||
Sbjct 1316 AGAACTCATCCGAGAAACTGAACCCCAAGGAGACAACAAGTTCAAGAACCCCATCCTACA 1375
Query 1373 AAGGTGCAAAACCGCATGCAACTAAATATCGTTCTGTTTCAGACCGAAGTAGCTTCGAAG 1432
|||| || ||||||| |||||| ||| || ||||||||||||||||||||||||| ||||
Sbjct 1376 AAGGCGCGAAACCGCCTGCAACGAAACATTGTTCTGTTTCAGACCGAAGTAGCTTAGAAG 1435
Query 1433 GTAAAAGCAGTCTGAATGAGTCAGCGAGTCTAGCGGACGAGTTAGTCCACGTTTCCAGCC 1492
|||||||||||||||| || ||| ||||||||||||| ||| ||||||| ||||||||||
Sbjct 1436 GTAAAAGCAGTCTGAAGGATTCAACGAGTCTAGCGGATGAGCTAGTCCAAGTTTCCAGCC 1495
Query 1493 AATGGTTCTTGATTTATTTGGAGAATTCAGTGAACAAAGGGTCTTTCTTGGTGAAGAAGG 1552
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1496 AATGGTTCTTGAAATATTTGGAGAATTCATTGAACAAAGGGTCTTTCTTGGTGAAGACGG 1555
Query 1553 AAGAAACAAATGGAAAAGAGTCTATTTTCGTCCACCTTAAAGCCGTAAACCATTGGCTCG 1612
||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||
Sbjct 1556 AAGAAACAAATGGAAAAGAGTCTCTTCTCGTCCACCTTAAAGCTTTAAACCATTGGCTCG 1615
Query 1613 ATGGTCTGATCTTAAACCGAATGGAAACCAACGAGAAAGTCGAAGATTTAAGAAAGAAGC 1672
||| ||||| ||||||| ||| ||||| |||||||||||||||||||||||||||||||
Sbjct 1616 ATGATCTGAACTTAAACAGAACAGAAACGAACGAGAAAGTCGAAGATTTAAGAAAGAAGC 1675
Query 1673 TGCAACGGTTTCTACTTGAGCATATTGAATTTGCCATTGGGGA-AGTTACAATTTGA 1728
|||||||||||||||||||||||||||||| || ||||||||| | ||||||| |||
Sbjct 1676 TGCAACGGTTTCTACTTGAGCATATTGAATCTGTCATTGGGGATACTTACAATATGA 1732
Score = 99.0 bits (53), Expect = 1e-19
Identities = 68/75 (91%), Gaps = 2/75 (3%)
Strand=Plus/Plus
Query 751 TTAA-GAAGTAGATATGTGGTGAAGCCTGCATCACCTATTTCCATGGCTAGTTCTCCGAA 809
|||| ||| ||| ||||||| ||||||| ||||||||| ||||||||||||||||||||
Sbjct 643 TTAAGGAACAAGA-ATGTGGTTAAGCCTGGATCACCTATATCCATGGCTAGTTCTCCGAA 701
Query 810 AGATGGTATCAAGTC 824
|||||||||||||||
Sbjct 702 AGATGGTATCAAGTC 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85441327590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5