BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901002
Length=252
Score E
Sequences producing significant alignments: (Bits) Value
AT2G31953.1 | Symbols: LCR76 | low-molecular-weight cysteine-ri... 416 4e-116
> AT2G31953.1 | Symbols: LCR76 | low-molecular-weight cysteine-rich
76 | chr2:13583430-13584020 FORWARD LENGTH=261
Length=261
Score = 416 bits (225), Expect = 4e-116
Identities = 237/243 (98%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAGCTCTATGCAGTTAATCTCTACTCTCTTCTTCCTAGTCATACTTGTTGTCGCA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGAGCTCTATGCAGTTAATCTCTACACTCTTCTTCCTAGTCATACTTGTTGTCGCA 60
Query 61 CCAGGTATGAAGATGGTTGTTGAAGGACAACCACAACTGTGCGAAACGAAAAGCTTAAAC 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 CCAGGTATGAAGATGGTTGTTGAAGGACAACCACAATTGTGCGAAACGAAAAGCTTAAAC 120
Query 121 TATAGGGGGTTGTGCATGAAATGGAGGAATTGCAAGCGAGTATGTATTAGCGAAGGTTTC 180
|| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 TACAGGGGGTTGTGCTTGAAATGGAGGAGTTGCAAGCGAGTATGTATTAGCGAAGGTTTC 180
Query 181 CCTGATGGTCGATGCAAGGGATTCTTCAACAACAAATGTGTTTGCAGGAAGCCTTGTGCT 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTGATGGTCGATGCAAAGGATTCTTCAACAACAAATGTGTTTGCAGGAAGCCTTGTGCT 240
Query 241 CTT 243
|||
Sbjct 241 CTT 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11461046772
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5