BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901031
Length=228
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32200.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 339 9e-93
AT2G32190.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 182 2e-45
> AT2G32200.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G32210.1);
Has 131 Blast hits to 131 proteins in 14 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 1; Plants - 130; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13676488-13677231
FORWARD LENGTH=486
Length=486
Score = 339 bits (183), Expect = 9e-93
Identities = 213/228 (93%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 1 ATGAGCCAATACAGCCAAAACCAATTTGAAGGAGCTTATACAACGCCGCCAGTGTCTACG 60
|||||||||||||| |||||||||| || |||||||||| | |||||||||||||||||
Sbjct 67 ATGAGCCAATACAGTCAAAACCAATATGCAGGAGCTTATCCTACGCCGCCAGTGTCTACC 126
Query 61 GGTCCCTACGTGGCACCGCCACCGCTCGGTTACCCAACGAACCACACAACTCATGCCACG 120
||||| |||||||||||||||||||||||||||||||||||| |||| |||||||| |||
Sbjct 127 GGTCCATACGTGGCACCGCCACCGCTCGGTTACCCAACGAACGACACGACTCATGCTACG 186
Query 121 GTTTCTCCTGTCGAGACAAAGTCTAAAGGTGAAGCTGCTGATGGATTCTTGAAAGGCTGT 180
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 187 GTGGCTCCTGTCGAGACAAAGTCTAAAGGTGAAGCTGCTGATGGATTCTTGAAAGGCTGT 246
Query 181 CTTGCGACCCTGTTGGCCTGTTGCGTCCTTGACGCATGCATCTTCTGA 228
||||||||| ||||||||||||||||||| ||||||||||| ||||||
Sbjct 247 CTTGCGACCATGTTGGCCTGTTGCGTCCTCGACGCATGCATTTTCTGA 294
> AT2G32190.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G32210.1);
Has 218 Blast hits to 218 proteins in 24 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 16; Plants - 202; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:13674498-13675286
FORWARD LENGTH=500
Length=500
Score = 182 bits (98), Expect = 2e-45
Identities = 187/227 (82%), Gaps = 17/227 (7%)
Strand=Plus/Plus
Query 1 ATGAGCCAATACAGCCAAAACCAAT-TTGAAGGAGCTTATACAACGCCGCCAGTGTCTAC 59
||||||||||||||||||||||||| || |||||||||| | |||||||||||||||||
Sbjct 91 ATGAGCCAATACAGCCAAAACCAATCTT-CAGGAGCTTATCCTACGCCGCCAGTGTCTAC 149
Query 60 GGGTCCC-TACGTGGCACCGCCACCGCTCGGTTACCCAACGAACCACA-CAACTCATGCC 117
|| ||| || || |||||||||||||||||||||| |||| | ||| | | |||||||
Sbjct 150 CGG-CCCTTATATGACACCGCCACCGCTCGGTTACCCGACGAGCGACATC-AGTCATGCC 207
Query 118 ACGGTTTCTCCTGTCGAGACAAAGTCTAAAGGTGAAGCTGCTGATGGATTCTTGAAAGGC 177
||||| |||| || ||||||||||| || | | | |||||||||||||||||||
Sbjct 208 ACGGTGGCTCCGGTGGAGACAAAGTC-CAA---G--G--G-TGATGGATTCTTGAAAGGC 258
Query 178 TGTCTTGCGACCCTGT-TGGCCTGTTGCGTCCTTGACGCATGCATCT 223
||||||||| || ||| | || ||||| ||||| ||||| ||| |||
Sbjct 259 TGTCTTGCGGCCATGTGTTGC-TGTTGTGTCCTCGACGCCTGCTTCT 304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10254620796
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5