BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901060
Length=402
Score E
Sequences producing significant alignments: (Bits) Value
AT2G36110.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 348 3e-95
AT2G32500.1 | Symbols: | Stress responsive alpha-beta barrel d... 326 1e-88
AT2G32490.1 | Symbols: | pseudogene of 3'-5' exonuclease domai... 326 1e-88
> AT2G36110.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr2:15161702-15162676 FORWARD
LENGTH=975
Length=975
Score = 348 bits (188), Expect = 3e-95
Identities = 318/376 (85%), Gaps = 27/376 (7%)
Strand=Plus/Plus
Query 36 CCGCTGTCTCATCATCCAGTTGTCTCACTGT-AACTACATCCCTGACATCCTTAGAAGTT 94
||||||||||||||||||||||||||||||| ||| ||| ||||| ||||| ||||||
Sbjct 421 CCGCTGTCTCATCATCCAGTTGTCTCACTGTAAAC-GCATTCCTGAGGTCCTTCGAAGTT 479
Query 95 TCTTGGAAGATCG-GACAATCACTGTTGTTGGAGTCTGG-A-A---TA-A-C----CAA- 141
||||||||||| | |||||||||| |||| || |||||| | | | | | |||
Sbjct 480 TCTTGGAAGAT-GAGACAATCACTTTTGTCGGCGTCTGGAACAGCCAAGACCAGGGCAAG 538
Query 142 ---GAGAGATTCCATCAACGA-TTGGAGATATGGAGGCTTGTCGACATAAGGGACTATCT 197
|| ||||||| || | | |||||||||||||| ||| | ||||||||| |||||||
Sbjct 539 CTCGAAAGATTCCGCCATC-AGTTGGAGATATGGAGACTTCTAGACATAAGGCACTATCT 597
Query 198 GCCTACGTGGCT-CTGGAAAT-GTTCGTTTGAGATGATTGTGGAGGAGTGTTTGGGATAC 255
||||||| |||| || ||| |||||||||||| |||||| |||||||||||||| ||
Sbjct 598 GCCTACGAGGCTCCT--CAATAGTTCGTTTGAGAAGATTGTAGAGGAGTGTTTGGGGTA- 654
Query 256 CAA-GGAGTGAGGAAAGATAAGGAGATATGTAGGAGTAACTGGGGAGCTCGTAACCTTTC 314
||| |||||||||||||||||||||||||||| |||||| ||||| ||||||| ||||||
Sbjct 655 CAAGGGAGTGAGGAAAGATAAGGAGATATGTATGAGTAATTGGGGTGCTCGTAGCCTTTC 714
Query 315 TGATGATCAGATTGTTCAGGCGTCACATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAA 374
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 715 CCATGATCAGATTGTTCAGGCGTCAGATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAA 774
Query 375 GGAACGTGTCTGGAAA 390
|||| || ||||||||
Sbjct 775 GGAATGTATCTGGAAA 790
> AT2G32500.1 | Symbols: | Stress responsive alpha-beta barrel
domain protein | chr2:13794426-13797227 REVERSE LENGTH=1883
Length=1883
Score = 326 bits (176), Expect = 1e-88
Identities = 317/382 (83%), Gaps = 21/382 (5%)
Strand=Plus/Minus
Query 37 CGCTGTCTCATCATCCAGTTGTCTCACTGTAACTACATCCCTGACATCCTTAGAAGTTTC 96
|||||||||||||| ||||||||||||||||| ||| |||| ||| ||||||||||||||
Sbjct 1476 CGCTGTCTCATCATTCAGTTGTCTCACTGTAAGTACGTCCCCGACGTCCTTAGAAGTTTC 1417
Query 97 TTGGAAGATCGGACAATCACTGTTGTTGGAGTCTGG-A-A---TA-AC-----CAA---- 141
|||||||||| |||||||||| |||| || || ||| | | | || |||
Sbjct 1416 TTGGAAGATCAGACAATCACTTTTGTCGGCGTATGGAACAGCCAAGACAAGGACAAGCTC 1357
Query 142 GAGAGATTCCATCAACGA-TTGGAGATATGGAGGCTTGTCGACATAAGGGACTATCTGCC 200
||||||||||| || | | ||||| || ||||| |||||| |||||||| ||||||| ||
Sbjct 1356 GAGAGATTCCACCATC-AGTTGGATATCTGGAGACTTGTCCACATAAGGCACTATCT-CC 1299
Query 201 -TACGTGGCTCTGGAAAT-GTTCGTTTGAGATGATTGTGGAGGAGTGTTTGGGATACCAA 258
| ||| ||||| | | | | |||||||||| ||||||| ||| || |||||| | ||
Sbjct 1298 ATCCGTTGCTCTTG-AGTAGCTCGTTTGAGACGATTGTGAAGGTGTATTTGGGGCATGAA 1240
Query 259 GGAGTGAGGAAAGATAAGGAGATATGTAGGAGTAACTGGGGAGCTCGTAACCTTTCTGAT 318
||||||| ||||||||||||| |||||| |||||| ||||| ||||||| ||| ||| ||
Sbjct 1239 GGAGTGACGAAAGATAAGGAGTTATGTATGAGTAATTGGGGTGCTCGTAGCCTCTCTCAT 1180
Query 319 GATCAGATTGTTCAGGCGTCACATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAAGGAA 378
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1179 GATCAGATAGTACAAGCGTCACATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAAGGAA 1120
Query 379 CGTGTCTGGAAAATGAGAGCTT 400
||| ||||||||||| ||||||
Sbjct 1119 CGTCTCTGGAAAATGGGAGCTT 1098
> AT2G32490.1 | Symbols: | pseudogene of 3'-5' exonuclease domain-containing
protein | chr2:13794633-13795213 FORWARD LENGTH=581
Length=581
Score = 326 bits (176), Expect = 1e-88
Identities = 317/382 (83%), Gaps = 21/382 (5%)
Strand=Plus/Plus
Query 37 CGCTGTCTCATCATCCAGTTGTCTCACTGTAACTACATCCCTGACATCCTTAGAAGTTTC 96
|||||||||||||| ||||||||||||||||| ||| |||| ||| ||||||||||||||
Sbjct 201 CGCTGTCTCATCATTCAGTTGTCTCACTGTAAGTACGTCCCCGACGTCCTTAGAAGTTTC 260
Query 97 TTGGAAGATCGGACAATCACTGTTGTTGGAGTCTGG-A-A---TA-AC-----CAA---- 141
|||||||||| |||||||||| |||| || || ||| | | | || |||
Sbjct 261 TTGGAAGATCAGACAATCACTTTTGTCGGCGTATGGAACAGCCAAGACAAGGACAAGCTC 320
Query 142 GAGAGATTCCATCAACGA-TTGGAGATATGGAGGCTTGTCGACATAAGGGACTATCTGCC 200
||||||||||| || | | ||||| || ||||| |||||| |||||||| ||||||| ||
Sbjct 321 GAGAGATTCCACCATC-AGTTGGATATCTGGAGACTTGTCCACATAAGGCACTATCT-CC 378
Query 201 -TACGTGGCTCTGGAAAT-GTTCGTTTGAGATGATTGTGGAGGAGTGTTTGGGATACCAA 258
| ||| ||||| | | | | |||||||||| ||||||| ||| || |||||| | ||
Sbjct 379 ATCCGTTGCTCTTG-AGTAGCTCGTTTGAGACGATTGTGAAGGTGTATTTGGGGCATGAA 437
Query 259 GGAGTGAGGAAAGATAAGGAGATATGTAGGAGTAACTGGGGAGCTCGTAACCTTTCTGAT 318
||||||| ||||||||||||| |||||| |||||| ||||| ||||||| ||| ||| ||
Sbjct 438 GGAGTGACGAAAGATAAGGAGTTATGTATGAGTAATTGGGGTGCTCGTAGCCTCTCTCAT 497
Query 319 GATCAGATTGTTCAGGCGTCACATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAAGGAA 378
|||||||| || || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 498 GATCAGATAGTACAAGCGTCACATGATGTCTATGTTTGCTGCAAGCTCGGTGTTAAGGAA 557
Query 379 CGTGTCTGGAAAATGAGAGCTT 400
||| ||||||||||| ||||||
Sbjct 558 CGTCTCTGGAAAATGGGAGCTT 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19001209122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5