BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901070
Length=2115
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32590.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN... 1921 0.0
> AT2G32590.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED
IN: 17 plant structures; EXPRESSED DURING: 9 growth stages;
CONTAINS InterPro DOMAIN/s: Barren (InterPro:IPR008418); Has
467 Blast hits to 447 proteins in 202 species: Archae - 0;
Bacteria - 4; Metazoa - 147; Fungi - 168; Plants - 39; Viruses
- 1; Other Eukaryotes - 108 (source: NCBI BLink). | chr2:13829420-13833209
REVERSE LENGTH=2016
Length=2016
Score = 1921 bits (1040), Expect = 0.0
Identities = 1164/1220 (95%), Gaps = 23/1220 (2%)
Strand=Plus/Plus
Query 903 AGAATGTGTGGAGCAAATGGTGCTAAACATGCGAAAGAAGGATGAGATTGTACCATCTCT 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 813 AGAATGTGTGGAGCAAATGGTGCTAAACATGCGAAAGAAGGATGAGATTGTACCATCTCT 872
Query 963 TCGGGCTATAATCAATCAATTTGATGAAGAGAACCAAAGACCATCTGATACGTTTTCTTG 1022
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 873 TCGGGCTATAATCAATCAATTTGATGAAGAGAACCAAAGACCATCTGACACGTTTTCTTG 932
Query 1023 TGGTCAGCAGACGACCGAGTCATTTGATATTTCACATGCTAATGATGCTAGCTATGCCGA 1082
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 933 TGGTCAGCAGACGACCGAGTCATTTGATATTTCACATGGTAATGATGCTAGCTATGCCGA 992
Query 1083 CGATGATGAAGGATATGAGAACTTTGGAACTTCTTTTGATTATGAGGGTCAATCTGGTGA 1142
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 993 CGATGATGAAGGATATGAGAACTTTGGAACTTCTTTTGATTATGAGGGTCAATCCGGTGA 1052
Query 1143 TGTTGATGAAAACTTTGGCCTCAATGATGCAGAACCAACATATTCAAATTTTCATGAGGA 1202
|||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||
Sbjct 1053 TGTTGATGAAAACTTTGGCCCCAATGAAGCAGAACCAATATATTCAAATTTTCATGAGGA 1112
Query 1203 AGTTGAACCAGCCTCACTGCAAGACCTGGATTCAGAAGACAGACTTGAGAATGTTGATGA 1262
||||||||||||||| ||||||||| |||||||||| |||||||| ||||||||||||||
Sbjct 1113 AGTTGAACCAGCCTCCCTGCAAGACATGGATTCAGATGACAGACTGGAGAATGTTGATGA 1172
Query 1263 CTATCTCTTTTTGTCGTTGGGAATTTCATCTAAGCAAAATTCTTGGGCAGGTCCTGATCA 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 CTATCTCTTTTTGTCGTTGGGAATTTCATCTAAGCAAAATTCTTGGGCAGGTCCTGATCA 1232
Query 1323 CTGGAAGTATCGGAAAACAAAAGGTCCAGATGTTCAATCTGCTTCAGAAAACAAATCTTC 1382
|||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| ||
Sbjct 1233 CTGGAAGTATCGAAAAACAAAAGGTCCAGATGTTCAACCTGCTTCAGAAATTAAATCCTC 1292
Query 1383 TCCACCAGCAAAGAAAACCAGGAAAAAGAAGCAAGCAGAGCCTGAACTAGATTTTACAAA 1442
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1293 TCCACCAGCGAAGAAAACCAGGAAAAAGAAGCAAGCAGAGCCTGAACTAGATTTTGCAAA 1352
Query 1443 AGCTTTAGAGGAAGAAATGCCTGATATTTTTGCCCCTCCAAAAAACCCAAAGTCTTTACT 1502
|||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1353 AGCTTTGGAGGAAGAAATGCCTGATATTTTTGCCCCTCCAAAAAACCCAAAGACTTTACT 1412
Query 1503 TCTCCCAGCAAGTAGAACCCCTTGTCAAACGAAGCTTCCAGAGGATTGCCATTATCAACC 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1413 TCTCCCAGCAAGTAGAACCCCTTGTCAAACGAAGCTTCCAGAGGATTGCCATTATCAACC 1472
Query 1563 TGAGAATCTAATAAAGCTATTTCTGCTACCGAATGTGATGTGCCTTGGGAGGAGGAGAAG 1622
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1473 TGAGAATCTAATAAAGCTATTTCTACTACCGAATGTGATGTGCCTTGGGAGGAGGAGAAG 1532
Query 1623 AAAAAGCTCAGGTGAAACTTCAAGACAGCAGCATGATGATTATGAACATGCAGAATCCTG 1682
||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1533 AAAAAACTCAGGTGAAACTTCAAGACAGCAGCCTGATGATTATGAACATGGGGAATCCTG 1592
Query 1683 GGGAAATGATAATGTGTATGATGATGATG--G-CCCATT---TGATAATGGAAATGATCA 1736
||||||||||||||| ||||||||||||| | |||||| |||||||| |||||||||
Sbjct 1593 GGGAAATGATAATGTTTATGATGATGATGATGGCCCATTCGATGATAATGAAAATGATCA 1652
Query 1737 AAGTGATGCAGAGGATACCAACTCATTAATCTCTCAGCCACGCCAGGTCAACAAAATTGA 1796
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1653 AAGTGATGCAGAGGATACCAACACATTAATCTCTCAGCCACGCCAGGTCAACAAAATTGA 1712
Query 1797 GGTCCAATACGATAAAGCTTCAAAACAAGTTGATGTGCAAGTGCTTAAGGAAACTCTTTG 1856
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1713 TGTCCAATACGATAAAGCTTCAAAACAAGTTGATGTGCAAGTGCTAAAGGAAACTCTTTG 1772
Query 1857 GGAGTGTCTTCAGGAATCTCATCAACCTCCAATTCAGAATCTGATTGTGCAGGATGAGGA 1916
||||||||||||||||||||||||||||||||||||| ||| | |||| |
Sbjct 1773 GGAGTGTCTTCAGGAATCTCATCAACCTCCAATTCAG-----GAT-G---AGGA--A--- 1818
Query 1917 ACATCAACAAGAACCACCTGAAAGTAGATCTTTCAAAGAGCTATTGGCTAGCTTCCCAGA 1976
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1819 -CATCAACAAGAACCACCTGAAAGTAGATCTTTCAAAGTGCTATTGGCTAGCTTCCCAGA 1877
Query 1977 TGATTGCCAAGCAGCCGGG-GCAACCCAAGACATCTCACCACATCTATGTTTTATCTGCT 2035
||||||||||||||||| | | |||||||||||||||||||||||||||||| |||||||
Sbjct 1878 TGATTGCCAAGCAGCCGAGAG-AACCCAAGACATCTCACCACATCTATGTTTCATCTGCT 1936
Query 2036 TGCTGCATTTGGCGAACGAGCACAATCTCAGCCTCGTTGGTTCTCAAAACTTGGATGATC 2095
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1937 TGCTGCATTTGGCGAACGAGCACAATCTCAGCCTCATTGGTTCTCAAAACTTGGATGATC 1996
Query 2096 TAACAATACACCTTGCCTGA 2115
||||||||||||||||||||
Sbjct 1997 TAACAATACACCTTGCCTGA 2016
Score = 1371 bits (742), Expect = 0.0
Identities = 790/814 (97%), Gaps = 0/814 (0%)
Strand=Plus/Plus
Query 1 ATGGATGAATCCTTAACTCCAAACCCTAAGCAAAGGCCAGCTTCAACGACGACTCGAATC 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 ATGGATGAATCCTTAACTCCAAACCCTAAGCAAAAGCCAGCTTCAACGACGACTCGAATC 60
Query 61 CAGGCTCCGACGAGTCCCTTCTTCTTGGGATCTAACGATGACAGATTGGAACGGGAACAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CAGGCTCCGACGAGTCCCTTCTTCTTGGGATCTAACGATGACAGATTGGAACGGGAACAA 120
Query 121 GCTCGCGCCGCTAGAGCCGCTGCTAGCCGTCGTAGGTCTGTCATTTTCGCTTGTGGGCCG 180
||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 121 GCTCGAGCCGCAAGAGCCGCTGCTAGCCGTCGTAGGTCTGTCATTTTCGCTCGTGGGTCT 180
Query 181 CAGCCTGAGTCGGAGTCCGATCCGTGTTTCGACAAACAGCAAATTCTCGAGTTGTTTCAG 240
||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 CAGCCTGAGACGGAGTCTGATCCTTGTTTCGACAAACAGCAAATTCTCGAGTTGTTTCAG 240
Query 241 AACTGTATCAAATTGGCCAGTGAAAACAAAATCAATCAAAAGAATACATGGGAGTTGAAT 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACTGTATCAAATTAGCCAGTGAAAACAAAATCAATCAAAAGAATACATGGGAGTTGAAT 300
Query 301 TTGATCGACCATCTTTGTGAGATTATCAAAGTTGAAGATGAGAACAATGCAGAAACAAAT 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 301 TTGATCGACCATCTTTGTGAGATTATCAAAGTTGAAGATGAGAACAATACAGAAACAAAT 360
Query 361 TTTCAGAAGGCAAGTTGCACTCTTGAAGCTGGAGTTAAGATTTACTCAATGCGGGTAGAC 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTTCAAAAGGCAAGTTGCACTCTTGAAGCTGGAGTTAAGATTTACTCAATGCGGGTAGAC 420
Query 421 TCAGTTCATTCAGAGGCATACAAGGTCTTGGGTGGAATTACTCGAGCTGGCCATGATGAC 480
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 421 TCTGTTCATTCAGAGGCATACAAGGTCTTGGGTGGAATTACCCGAGCTGGCCATGATGAC 480
Query 481 AGTGGAGATAACGAGGATGCTGCTGGTACTGTAGAAAATGCAACTAACCAAAAGAAACAG 540
|||||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||
Sbjct 481 GGTGGAGATCACGAGGATGCTGCTGGTGCCGTAGAAAATGCAACTAACCAAAAGAAGCAG 540
Query 541 ACAGAGAAAAAGATATCGCCTTTATCAACACTGGAACCTTCCTTTGATGCCCTTAACGTG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CCAGAGAAAAAGATATCGCCTTTATCAACACTGGAACCTTCCTTTGATGCCCTTAACGTG 600
Query 601 AAGAAGTTTGATGTGGCATTTGCAGTGGATCCCCTTTATCATCAGACTTCCGCACAGTTT 660
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 601 AAGAAATTTGATGTGGCATTTGCAGTGGATCCCCTTTATCATCAGACTTCAGCACAGTTT 660
Query 661 GATGAAGGTGGAGCAAAGGGCCTGCTACTAAACAATTTAGGAGTCTATGGAGGGTGTCAA 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 661 GATGAAGGTGGAGCAAAGGGCCTGCTGCTAAACAATTTAGGAGTCTATGGAGGGTGTCAA 720
Query 721 GTTCTATTTGATTCACAAGAAATCCCTGGAAAGCTTGTTTCGTCTGCAAATAAGCATGAC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTTCTATTTGATTCACAAGAAATCCCTGGAAAGCTTGTTTCGTCTGCAAATAAGCATGAC 780
Query 781 AAATCAGAAACAATTGATCTATCCTTTGCTAAAG 814
|||||||||||||||||||||||||||| |||||
Sbjct 781 AAATCAGAAACAATTGATCTATCCTTTGTTAAAG 814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104868938505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5