BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901090
Length=3297
Score E
Sequences producing significant alignments: (Bits) Value
AT2G32780.1 | Symbols: UBP1, ATUBP1 | ubiquitin-specific protea... 2017 0.0
AT1G04860.1 | Symbols: UBP2, ATUBP2 | ubiquitin-specific protea... 628 7e-179
> AT2G32780.1 | Symbols: UBP1, ATUBP1 | ubiquitin-specific protease
1 | chr2:13898431-13901870 REVERSE LENGTH=3252
Length=3252
Score = 2017 bits (1092), Expect = 0.0
Identities = 1350/1473 (92%), Gaps = 23/1473 (2%)
Strand=Plus/Plus
Query 1838 ATATAACAGATAGGGCAGGTGAGGGCGAAGCTTCCTCGTCATTCGTGAGCGGTGACCATG 1897
||| ||||| ||| |||||| |||| |||||||||||||||||| | || |||||||||
Sbjct 1790 ATAAAACAGTTAGTGCAGGTAAGGGTGAAGCTTCCTCGTCATTCATAAGTAGTGACCATG 1849
Query 1898 AACCAAAA-ATAGACTATATTGACTTTAGCAGtttttttGATGAGCCTGAGATACCCGAA 1956
|| ||||| ||||| ||| |||||||||||||||||||||| |||||||||||| |||||
Sbjct 1850 AA-CAAAACATAGATTATGTTGACTTTAGCAGTTTTTTTGACGAGCCTGAGATATCCGAA 1908
Query 1957 GGACCTGTT-TTTAGACTGCTATCTAAAGCTGAAGTTTCTGAAGCTGGTTTTATGGCTGA 2015
||||| || ||| ||| |||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1909 AGACCT-TTCTTTCGACCGCTATCTAAATCTGAAGTTTCTGAAGCTGGTTTTAAGGCTGA 1967
Query 2016 CAGCAGTAATGATAAAACAGTTAGTGCAGGTAAGGGTGAAGCTTCCTCGTCATTCGTAAG 2075
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1968 CTGCAGTGATGATAAAACAGTTAGTGCAGGTAAGGGTGAAGCTTCCTCGTCATTCGTAAG 2027
Query 2076 CAGTGACCATGAACAAAACATAGATTATGTGGACTTT-GCCAGtttttttGACGAGCCTG 2134
|||||||||||||||||||||||||||||| |||||| || ||||||||||| |||||||
Sbjct 2028 CAGTGACCATGAACAAAACATAGATTATGTTGACTTTAGC-AGTTTTTTTGATGAGCCTG 2086
Query 2135 AAATATCGGAAGGGCCTTAT-TTTCGACCATTATCTAAATCTGAAGTTTCTGAAGCTGGT 2193
| ||||| ||| | |||| | |||||||| ||||||||||||||||||||||||| |||
Sbjct 2087 AGATATCCGAAAGACCTT-TCTTTCGACCGCTATCTAAATCTGAAGTTTCTGAAGCAGGT 2145
Query 2194 TTTATGGCCGTCAGCAGTAATGATAAAACAGTTAGGGCAGGTAAGGGTGAAACTTTTTCG 2253
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2146 TTTATGGCTGTCAGCGGTAATGATAAAACAGTTAGGGCAGGTAAGGGTGAAACTTTTTCT 2205
Query 2254 TCATTCATGAACGGTGACAATGAAAGAAACATAGATTATGA--A-TCTATTAACAGTTTA 2310
|||||||||| ||||||||||||| ||||||||||||||| | | || |||||| ||
Sbjct 2206 TCATTCATGAGCGGTGACAATGAACGAAACATAGATTATGTTGAGTTTACTAACAGAATA 2265
Query 2311 TTTTACGACCGTGAGACATCTGAAAGACCTGTTTTTGGACCACCATCTAAAGCTAAAGTT 2370
|| | || |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2266 TTCGATGATCGTGGGACATCTGAAAGACCTGTTTTTGGACCACCATCTAAAGCTAAAGTT 2325
Query 2371 TCTGAAGCTTGTTTTATGGCTGTCAGCAGCGACTCTGATCCTGCAGTTCTTGATGATTCG 2430
||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 2326 TCTGAAGCTGGTTTTGTGGCTGTAAGCAGCGACTCTGATCCTGCAGTTCTTGATGAATCG 2385
Query 2431 GATTCACCAGTGTCTGTAGATAGGTGTTTGGCTCAGTTCACCAAGCCTGAGATTTTGTCA 2490
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 2386 GATTCACCAGTGTCTGTAGATAGGTGTTTGGCTCAGTTCACGAAGCATGAGATTTTGTCA 2445
Query 2491 GAAGACAATGCTTGGCATTGTGAGAATTGTTCGAAGAACCTAAAACTTGAGCGGTTGAGA 2550
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2446 GAAGACAATGCTTGGCATTGTGAGAATTGTTCGAAGAACCTAAAACTTCAGCGGTTGAGA 2505
Query 2551 GAAAAGAGAAAAACTGAA-A-G-ATTGAGCAA-AGGATGGGTGAATGAAAATGGAGCTAG 2606
|||||||||| |||| || | | ||||||||| || ||||||||||||||||||||||||
Sbjct 2506 GAAAAGAGAAGAACTAAAGAAGGATTGAGCAACAG-ATGGGTGAATGAAAATGGAGCTAG 2564
Query 2607 TTCGGTTTTTGATGAGTGTAGAGACAATTCATTAAGTCAATCCTGTATAGATCCCGAAAA 2666
||||| |||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||
Sbjct 2565 TTCGGCTTTTGATGAGTGTAGAGACAGTTCACTAAATCAATCCTGTATAGATCTCGAAAA 2624
Query 2667 CGGGTATAAAGCTGCTCCTCCGATCACAGAATTGCCAAACTGCAAGGAAGAGGAAAACGC 2726
||| || ||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 2625 CGGTTACAAAGCTGCTCCTCCGATCACAAAATTGCCAAACTGCAAGGAAGAGGAAAGCGC 2684
Query 2727 AATAGATGATGGAATTCTGGGAGACTCAGATCCAAAGCAAGCTCCAATTACTTCTTCTGT 2786
||||||||||||| || ||||||| | || ||||||||||||||||||||||| ||
Sbjct 2685 AATAGATGATGGATTTGTGGGAGAGGAAAATACAAAGCAAGCTCCAATTACTTCT---GT 2741
Query 2787 TACTGAAACTCCTATCCTCGGTGGAGAAACCATCAGTTCTCAACCAGCCAACGACAATGA 2846
||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2742 TACTGAAACACCTCTCCTCGGTGGAGAAACCATCAGTTCTCAACCAGCCAGTGACAATGA 2801
Query 2847 ATGTGAAAACTGGGAAGACTTGGCAGTAGATTCTGA-GAAAGTGATAGTAAAAAGAGCTG 2905
||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||| ||
Sbjct 2802 ATGTGAAAATTGGGAAGACTTGGCAGTAGATTCTGAAGAA-GTGATAGTAAAAAGAGATG 2860
Query 2906 CTACTAAAAAGGTACTTGTAAACAAGGCACCACCTGTCTTGACCATTCATCTCAAAAGGT 2965
||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 2861 CTAGGAAAAAGGTACTTATAAACAAGGCACCACCTGTCTTGACCATACATCTCAAAAGGT 2920
Query 2966 TCAGCCAAGATGCTCGAGGCAGAATAAGCAAGCTAAGTGGCCATGTTGATTTCCAAGAGT 3025
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2921 TCAGCCAAGATGCTCGAGGCAGGGTAAGCAAGCTAAGTGGCCATGTTGATTTCCAAGAGT 2980
Query 3026 TCATTGATCTTAGCCAATATATGGATACCAGGTGCTCCGAAGAAGACCAGCCGGTTTACA 3085
|||| ||||||||| |||| ||||| || |||||||||||||||||| ||||||||||||
Sbjct 2981 TCATCGATCTTAGCAAATACATGGACACTAGGTGCTCCGAAGAAGACGAGCCGGTTTACA 3040
Query 3086 GGTTGGCCGGGTTAGTGGAGCATTTAGGGACAATGAGAGGAGGTCATTATGTTGCTTACA 3145
||||||||||||||||||| ||||||||| ||||||| |||||||||||||| ||||||
Sbjct 3041 GGTTGGCCGGGTTAGTGGAACATTTAGGGGCAATGAGTCGAGGTCATTATGTTTCTTACA 3100
Query 3146 TTAGAGGAGGCCACAAGGAGATGAG-GCAGTCTGATATTAAAGAACCAAACTCATCCATA 3204
||||||||||||||||||||| ||| | | ||||||| ||||||||||||||||||||||
Sbjct 3101 TTAGAGGAGGCCACAAGGAGAGGAGAG-ACTCTGATACTAAAGAACCAAACTCATCCATA 3159
Query 3205 TGGTATCACGCAAGCGATTCTTTTGTTCGACGGGCTTCTTTGGAAGAAGTTCTCCGTTCT 3264
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 3160 TGGTATCACGCAAGCGATTCTCAGGTTCGACCGGCTTCTTTGGAAGAAGTTCTCCGTTCT 3219
Query 3265 GAAGCGTATATCTTATTTTACGAACGAATCTGA 3297
||||| |||||||||||||||||||||||||||
Sbjct 3220 GAAGCCTATATCTTATTTTACGAACGAATCTGA 3252
Score = 1624 bits (879), Expect = 0.0
Identities = 1106/1212 (91%), Gaps = 29/1212 (2%)
Strand=Plus/Plus
Query 76 AAGCAATCTGAGCACAGCGTGGAGGTAACTGAGGAG---GTTGTGACAGTGCCGGAAAAA 132
|||||||||||||| |||||||| |||||||||||| | ||||||| || | ||||||
Sbjct 28 AAGCAATCTGAGCAAAGCGTGGAAGTAACTGAGGAGTTTGCTGTGACAATGACAGAAAAA 87
Query 133 AGATCTTGTGTCCATTTTGATAAATTTGTTGATTTGGATAAGCTGTTGAAAAAGATTAAA 192
||||||||||||||||||||||||| |||||||||||||||| ||||||||| || |||
Sbjct 88 AGATCTTGTGTCCATTTTGATAAATATGTTGATTTGGATAAGTTGTTGAAAATTATCAAA 147
Query 193 TCCTCTCAACAAATCAAGTGTGGAGAATGCAAGGAAGGAGTGCACGTGAAGAGAGGAAGT 252
|| | ||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct 148 TCTTATCAACAAATCAAGTGTGGAGAATGCAATGAAAGAGTTCACGTGAAGAGAGGAAGT 207
Query 253 A-AAGCGAGTATTAGTAGCGGGATATACTGGTTTTCTTCTTCTGACCAGAAGTGTGCTAA 311
| | | | || ||||| | ||| | |||||| |||||| ||||||||||| |||||||
Sbjct 208 AGATG-GGGTGCTAGTAACAGGAGAGACTGGTATTCTTCCTCTGACCAGAATTGTGCTAG 266
Query 312 AAAGGCTATTTGGGTTTGTTTGGAATGTGGCTATTATGTTTGTGGAGATGTTGGTTTACC 371
||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 267 AAATGCTATTTGGCTTTGTTTGGAATGTGGCTATTATGTTTGTGGAGATGTTGGTTTGCC 326
Query 372 GACTGGGGCTCAGAGTCATGTTATGCGGCACT-TCAGGTTGACGCGTCACCGTTTGGTGA 430
||||| ||||||||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 327 GACTGAGGCTCAGAGTCATGTTATGGGGCA-TAACAGGTTGACGCGTCACCGTTTGGTGA 385
Query 431 TTCAATGTGAAAATCCTCAGTTAAGATGGTGTTTCTCATGCCAATCACTTGTCCCTTTTG 490
|||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 386 TTCAATGTAAAAATCCTCAGTTAAGGTGGTGTTTCTCATGCCAATCACTTCTCCCTTTTG 445
Query 491 AAAAAGAAGAGAATGGTGAGAAGAAAGATTTGTTGCTGGAAGTCGTGAAATTGATTAGAG 550
| || ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 446 ATAATGAAGAGAATGGTGAGAAAAAAGATTTGTTGCTGGAAGTTGTGAAATTGATTAGAG 505
Query 551 AACGATCTCCAAACACGTTCTCCGCTTCATTTGAAACTGAATATTCATGTTCAGGAAGTG 610
|| ||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 506 AAAGATCTCCAAACACGTACTCTGCTTCATTTGAAACTGAATTTTCATGTTCAGGAA--- 562
Query 611 GTAATATCACTGGTGGTAGTTTCACTGGTGGTATAGAAGCAAGAGATGGTTATGCTGTAA 670
| ||| | | | |||||||||||||||||||||||||||||||||||
Sbjct 563 G---TAT--C-----------T-A-TGGTGGTATAGAAGCAAGAGATGGTTATGCTGTAA 604
Query 671 GAGGTTTAGTTAACCTTGGGAACACATGTTTCTTTAATTCTGTAATGCAGAGCCTTCTCT 730
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 605 GAGGTTTAGTTAACCTTGGGAACACATGTTTCTTTAATTCTGTAATGCAGAACCTTCTCT 664
Query 731 CTTTGGATCAATTACGTGAGCACTTCTTGAAAGATGATCTATCTGTTAGCGGGCCTCTCG 790
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 665 CTTTGGATCAATTACGTGAGCACTTCTTGAAAGAGGATCTATCTGTTAGCGGGCCTCTCG 724
Query 791 TTTCTTCCCTGAAGAAATTATTTGCTGAATCAAAATCAGAGGCAGGCTTTTTTAGGAGTG 850
|||||||||||||| || |||||||||||||||| ||||||||| || ||||||||| ||
Sbjct 725 TTTCTTCCCTGAAGGAACTATTTGCTGAATCAAATTCAGAGGCAAGCGTTTTTAGGAATG 784
Query 851 CGATAAATCCAAGAGCCCTTTTCGTTTCTGTCTGTTCTCAGGCTCCTCAATTTAGGGGAT 910
|||||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 785 AGATAAATCCAAGAGACCTTTTCTTTTCTGTCTGTTCTCAGGCTCCCCAATTTAGGGGAT 844
Query 911 ATCAGCAGCATGACAGTCATGAGTTGCTTAGATGTTTGTTGGATGGTCTGAGCATTGAAG 970
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 845 ATCAGCAGCATGACAGTCATGAGTTGCTAAGATGTTTGTTGGATGGTTTGAGCATTGAAG 904
Query 971 AATCGAGCCTGAGGAAGAAGTTTGGTGTTTCTGATAGTAATGACAGTTCTACATATCAGA 1030
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 905 AATCGAGCCTGAGGAAGAAGCTTGGTGTTTCTGATAGTAATGACAGTTCTACATATCAGA 964
Query 1031 AACCTACTCTCATAGATTCTGTATTTGGAGGTGAAATTTCGAGCACTGTTTCTTGTTTGG 1090
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 965 AACCTACTCTCATAGATTCTGTATTTGGAGGTGAAATATCGAGCACTGTTTCTTGTTTAG 1024
Query 1091 CATGCGGGCATTTCTCAAAAGTGTATGAACCCTTTTTGGATCTCTCTTTACCTATTCCGT 1150
|||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 1025 AATGCGGACATTTCTCAAAAGTGTATGAACCCTTTATGGATCTCTCTTTACCCGTTCCGT 1084
Query 1151 CCAAGAAACTTCCTCCTAAAAAGCAACGAATTGTTTCTCTGGCAAAGGAGGTCCTTAAGA 1210
||| ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||
Sbjct 1085 CCATGAAACTTCCTCCTAAAAAGCAACAAATCCTTTCTCAGGCAAAGGAGGTCCTTAAGA 1144
Query 1211 ATGGGGCAGTCGGCAAAGATTCAGAAGTTGGGTCAGCTAAACCTGCATCGGATCACAATT 1270
||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 1145 ATGGGGCAGTCAGCAAAGATTCAGAAGTTGTGTCCGCTAAACCTGCATCGGATCACAATT 1204
Query 1271 TCACTGTTTCCA 1282
||| ||| |||
Sbjct 1205 CCACAGTT-CCA 1215
Score = 643 bits (348), Expect = 0.0
Identities = 481/543 (89%), Gaps = 18/543 (3%)
Strand=Plus/Plus
Query 1864 GAAGCTTCCTCGTCATTCGTGAGCGGTGACCATGAACCAAAAATAGACTATATTGACTTT 1923
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1627 GAAGCTTCCTCGTCATTCGTGAGCGGTGACCATGAACCAAAAAAAGACTATTTTGACTTT 1686
Query 1924 AGCAGtttttttGATGAGCCTGAGATACCCGAAGGACCTGTTTTTAGACTGCTATCTAAA 1983
||||||||| |||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1687 AGCAGTTTTCTTGATGAGCCTGAGATACGCGAAGGACCTGTTTTTAGACCACTATCTAAA 1746
Query 1984 GCTGAAGTTTCTGAAGCTGGTTTTATGGCTGACAGCAGTAATGATAAAACAGTTAGTGCA 2043
||||||||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||
Sbjct 1747 TCTGAAGTTTATGAAGCTGGTTTTAAGGCTGACTGCAGTGATGATAAAACAGTTAGTGCA 1806
Query 2044 GGTAAGGGTGAAGCTTCCTCGTCATTCGTAAGCAGTGACCATGAACAAAACATAGATTAT 2103
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 1807 GGTAAGGGTGAAGCTTCCTCGTCATTCATAAGTAGTGACCATGAACAAAACATAGATTAT 1866
Query 2104 GTGGACTTT-GCCAGtttttttGACGAGCCTGAAATATCGGAAGGGCCTTAT-TTTCGAC 2161
|| |||||| || |||||||||||||||||||| ||||| ||| | |||| | |||||||
Sbjct 1867 GTTGACTTTAGC-AGTTTTTTTGACGAGCCTGAGATATCCGAAAGACCTT-TCTTTCGAC 1924
Query 2162 CATTATCTAAATCTGAAGTTTCTGAAGCTGGTTTTATGGCCGTCAGCAGTAATGATAAAA 2221
| ||||||||||||||||||||||||||||||||| ||| | | ||||| |||||||||
Sbjct 1925 CGCTATCTAAATCTGAAGTTTCTGAAGCTGGTTTTAAGGCTGACTGCAGTGATGATAAAA 1984
Query 2222 CAGTTAGGGCAGGTAAGGGTGAAACTTTTTCGTCATTCATGAA-CGGTGACAATGAA-AG 2279
||||||| ||||||||||||||| ||| ||||||||| | || | ||||| ||||| |
Sbjct 1985 CAGTTAGTGCAGGTAAGGGTGAAGCTTCCTCGTCATTCGT-AAGCAGTGACCATGAACA- 2042
Query 2280 AAACATAGATTATGA--ATCTATTAACAGTTTATTTT-ACGA-CCGTGAGACATCTGAAA 2335
|||||||||||||| | || ||| |||||| |||| | || || ||||| ||| ||||
Sbjct 2043 AAACATAGATTATGTTGA-CT-TTAGCAGTTT-TTTTGATGAGCC-TGAGATATCCGAAA 2098
Query 2336 GACCTGTT-TTTGGACCACCATCTAAAGCTAAAGTTTCTGAAGCTTGTTTTATGGCTGTC 2394
||||| || ||| |||| | ||||||| || ||||||||||||| ||||||||||||||
Sbjct 2099 GACCT-TTCTTTCGACCGCTATCTAAATCTGAAGTTTCTGAAGCAGGTTTTATGGCTGTC 2157
Query 2395 AGC 2397
|||
Sbjct 2158 AGC 2160
Score = 468 bits (253), Expect = 2e-130
Identities = 330/366 (90%), Gaps = 10/366 (3%)
Strand=Plus/Plus
Query 1375 GATTTGGACTTGCTAGGTGATGTTAGTGATACCGCCCCATCAACCAAGGCTAAAGGAGTT 1434
||||||| |||||| | |||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1273 GATTTGGTTTTGCTAAGCGATGTTAGTGATACTGCCCCATCAACCGAGGCTAAAGGAGTT 1332
Query 1435 AATCAGACTTTGGTAGGTAGCACAGAAACGCTGATGCATGATAATGAT-GTAACTGCAAA 1493
||||||| |||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1333 AATCAGATTTTGGTAGGTAGCACAGAAACGCTGATGCATGATAATGATCG-AACTG---G 1388
Query 1494 ACCAGAAACTGTACCAGATAAAGAAGAAT-CACGAGCTACGCAATCTAATGAAGACACAT 1552
| | ||||||||||||||||||||| || |||||||||||| ||||||||||| ||||
Sbjct 1389 A--A-AAACTGTACCAGATAAAGAAG-ATGTACGAGCTACGCAGTCTAATGAAGAAACAT 1444
Query 1553 CTGCAAGTGGGATTTCCGCAGTGATAGATGAGGCTCAAGTTTTCCGTTCTCCTGATTTTG 1612
|||||||||||||||| ||||||||||||||||||||||||| | ||| ||||||||| |
Sbjct 1445 CTGCAAGTGGGATTTCAGCAGTGATAGATGAGGCTCAAGTTTGCGGTTGTCCTGATTTAG 1504
Query 1613 AGAAAAGTTCTTCATCTGCAAATCAGTGGGCTGATGAAGAGCTTCCCTTGATGGTTCCAG 1672
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||
Sbjct 1505 AGCAAAGTTCTTCATCTGCAAATCAGGGGGCTGATGAAGAGCTTGCCTTGATGGTTGCAG 1564
Query 1673 ATTCTCAGGTTCTGTATATGCCTTACAAAGATCATTTATCCTATGATGATAATACAGTTG 1732
||||||||||||||||||||||||| |||||||| |||| |||||||||| ||| ||||
Sbjct 1565 ATTCTCAGGTTCTGTATATGCCTTATAAAGATCACTTATTCTATGATGATTATATGGTTG 1624
Query 1733 CAGAAG 1738
||||||
Sbjct 1625 CAGAAG 1630
> AT1G04860.1 | Symbols: UBP2, ATUBP2 | ubiquitin-specific protease
2 | chr1:1369054-1373101 REVERSE LENGTH=3418
Length=3418
Score = 628 bits (340), Expect = 7e-179
Identities = 856/1096 (78%), Gaps = 72/1096 (7%)
Strand=Plus/Plus
Query 137 CTTGTGTCCATTTTGATAAATTTGTTGATTTGGATAAGCTGTTGAAAAAGATTAAATCCT 196
||||||| ||||| ||||| | || ||||||| ||| ||||| | |||||||| || |
Sbjct 426 CTTGTGTGCATTTCGATAAGGCTCTTAATTTGGAGAAGGTGTTGGATAAGATTAAGTCAT 485
Query 197 CTCAACAAATCAAGTGTGGAGAATGCAAGGAAGGAGTGCACGTG-AAGAGAGGAAGTAAA 255
| | || || ||||||| ||||||||| ||||||||| | | | |||||||||| ||||
Sbjct 486 CCCGGCAGATTAAGTGTGCAGAATGCAATGAAGGAGTGTATG-GAAAGAGAGGAACTAAA 544
Query 256 GC-GAGTATTAGTAGCGGGATATACTGG--TTTTCTTCTTCTGA-CCAGAAGTGTGCTAA 311
|| || |||| |||| | | || |||||||||||||| ||| || | | |||
Sbjct 545 GCAAAG-GGCAGTAAAGGGA-AGA-AGGATTTTTCTTCTTCTGATCCA-AAATCTAATAA 600
Query 312 -AAAGGCTATTTGGGTTTGTTTGGAATGTGGCTATTATGTTTGTGGAGATGTTGGTTTAC 370
||| || |||||| | |||||||||||||||| |||||||||||||| |||||||||||
Sbjct 601 CAAA-GCCATTTGGCTATGTTTGGAATGTGGCTGTTATGTTTGTGGAGGTGTTGGTTTAC 659
Query 371 CGACTGGGGCTCAGAGTCATGTTATGCGGCACTTCAG-GTTGACGCGTCACCGTTTGGTG 429
| | ||| ||||||| |||||| |||| ||| ||| | |||| |||||||| ||||||
Sbjct 660 CAAATGGACCTCAGAGCCATGTTTTGCGACACAGCAGAG-TGACACGTCACCGATTGGTG 718
Query 430 ATTCAATGTGAAAATCCTCAGTTAAGATGGTGTTTCTCATGCCAATCACTTGTCCCTTTT 489
|||||||| ||||||||||||||||||||||||||| | ||||| | ||| ||||| ||
Sbjct 719 ATTCAATGGGAAAATCCTCAGTTAAGATGGTGTTTCCCGTGCCAGTTGCTTCTCCCTGTT 778
Query 490 GAAAAAGAAGAGAATGGTGAGAAGAAAGATTTGTTGCT-GGAAGTCGTGAAATTGATTAG 548
||||||||||| ||||| |||||||||||| | || | || || || ||||||||||
Sbjct 779 GAAAAAGAAGATAATGGCGAGAAGAAAGATGTACTG-TCAGAGGTTGTTAAATTGATTAA 837
Query 549 AGAACGATCTCCAAACACGTTCTCCGCTTCATTTGA-AACTGAATATTCA-TGTTCAGGA 606
|| ||||||| |||| || | ||||||| || | | ||| | ||| || ||||||
Sbjct 838 AGGACGATCTTTGAACA-ATT-T-AGCTTCATCCGATATC-GAAGA-TCAGTGCTCAGGA 892
Query 607 AGTGGTAATATCACT-G-G---------TGGTA-GT--T-TCACTGGTGGTATAGAAGCA 651
||||| | ||||||| | | | | | || | | || ||| ||||||||||
Sbjct 893 AGTGGCAGTATCACTAGTGATATCAAACTAGAAGGTGCTGTGACCAGTGATATAGAAGCA 952
Query 652 AGAGATGGTTATGCTGTAAGAGGTTTAGTTAACCTTGGGAACACATGTTTCTTTAATTCT 711
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 953 AGAGATGGTTATGTTGTGCGAGGTTTAGTTAACCTTGGGAACACATGTTTCTTTAATTC- 1011
Query 712 G-TAATGCAGAGCCTTCTCTCTTTGGATCAATTACGTGAGCACTTCTTGAAAGATGA-TC 769
| ||||||||| ||||| |||||||||| ||||| || |||||||||||||| || |
Sbjct 1012 GATAATGCAGAATCTTCTTTCTTTGGATCGGTTACGCGATCACTTCTTGAAAGA-GAATG 1070
Query 770 TATCTGT--TAGC-GGGCCTCTCGTTTCTTCCCTGAAGAAATTATTTGCTGAATCAAAAT 826
|||| | | |||||||| | |||||||||| ||||||||| ||||| | |||
Sbjct 1071 GGTCTGGGGTCGGTGGGCCTCTTGCGTCTTCCCTGAGGAAATTATTCACTGAAACGAAAC 1130
Query 827 CAGAGGCAGGCTTTTTTAGGAGTGCGATAAATCCAAGAGCCCTTTTCGTTTCTGTCTGTT 886
||||||||||||| || |||| ||||||||| |||||| |||| | ||| ||||||
Sbjct 1131 CAGAGGCAGGCTTGA--AG-AGTGTGATAAATCCTAGAGCCTTTTTTGGGTCTTTCTGTT 1187
Query 887 CTCAGGCTCCTCAATTTAGGGGATATCAGCAGCATGACAGTCATGAGTTGCTTA-GATGT 945
|| |||| || || || |||||||| | |||||||| || || |||||||| | | |||
Sbjct 1188 CTAAGGCACCCCAGTTCCGGGGATATGACCAGCATGATAGCCACGAGTTGCT-ACGCTGT 1246
Query 946 TTGTTGGATG-GTCTGAGCATTGAAGAATCGAGCCT-GAGGAAGAAGTTTGGTGTTTCTG 1003
||| | ||| || |||||| ||||||||| |||| ||| |||||| |||||||||||
Sbjct 1247 TTGCTAGATTCGT-TGAGCACCGAAGAATCG-GCCTTGAGAAAGAAGCGTGGTGTTTCTG 1304
Query 1004 ATAGTAATGACAGTTCTACATATCAGAAACCTACTCTCATAGATTCTGTATTTGGAGGTG 1063
||| | |||| | | | ||| | | |||||||||||| |||||||||||||| |
Sbjct 1305 ATAATGATGA--G----A-A-ATCT-A--C-TACTCTCATAGAATCTGTATTTGGAGGCG 1352
Query 1064 AAATTTCGAGCACTGTTTCTTGTTTGGCA-TGCGGGCATTTCTCAAAAGTGTATGAACCC 1122
||| ||||||| |||| |||| ||| | |||||||||| ||||||||| ||||||||
Sbjct 1353 AAACGTCGAGCATTGTTAGTTGTATGG-AGTGCGGGCATTCCTCAAAAGTCTATGAACCA 1411
Query 1123 TTTTTGGATCTCTCTTTACCTATTCCGTCCAAGAAACTTCCTCCTAAAAAGCAACGAAT- 1181
|||||||||||||| ||||| | || | ||||||| ||||||||||| | || ||
Sbjct 1412 TTTTTGGATCTCTCCTTACCCGTACCATTCAAGAAAAGCCCTCCTAAAAAACCAC-AACC 1470
Query 1182 TGTTTCTCTG-GCAAA 1196
|||||||| | |||||
Sbjct 1471 TGTTTCTC-GAGCAAA 1485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 164045903610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5