BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901120

Length=240
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G13430.1 | Symbols: IIL1, ATLEUC1 | isopropyl malate isomera...   244    2e-64


> AT4G13430.1 | Symbols: IIL1, ATLEUC1 | isopropyl malate isomerase 
large subunit 1 | chr4:7803933-7807871 REVERSE LENGTH=1873
Length=1873

 Score =  244 bits (132),  Expect = 2e-64
 Identities = 144/150 (96%), Gaps = 0/150 (0%)
 Strand=Plus/Plus

Query  1    ATGACAATGACGGAGAAGATTCTAGCTAGAGCTTCTGAGAAATCATTAGTGGTTCCCGGT  60
            ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct  281  ATGACAATGACGGAGAAGATTCTAGCTAGAGCTTCGGAGAAGTCATTAGTGGTTCCTGGT  340

Query  61   GATAACGTTTGGGTTAATGTTGATGTTCTTATGACTCATGATGTTTGTGGACCTCGTGCT  120
            |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct  341  GATAACATTTGGGTTAATGTTGATGTTCTTATGACTCATGATGTTTGTGGTCCTGGTGCT  400

Query  121  TTTGGTATCTTCAAGAGAGAGTTTGGTGAA  150
            ||||||||||||||||||||||||||||||
Sbjct  401  TTTGGTATCTTCAAGAGAGAGTTTGGTGAA  430



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10857833784


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5