BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901141
Length=1296
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33230.1 | Symbols: YUC7 | YUCCA 7 | chr2:14080411-14081971 ... 1973 0.0
AT5G43890.1 | Symbols: YUC5, SUPER1 | Flavin-binding monooxygen... 191 2e-47
> AT2G33230.1 | Symbols: YUC7 | YUCCA 7 | chr2:14080411-14081971
REVERSE LENGTH=1296
Length=1296
Score = 1973 bits (1068), Expect = 0.0
Identities = 1223/1299 (94%), Gaps = 6/1299 (0%)
Strand=Plus/Plus
Query 1 ATGTGTGATAACAATAACACAAGTTGTGTCAACATCTCAAGTATGCTTCAGCCTGAGGAC 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTGTAATAACAATAACACAAGTTGTGTCAACATCTCAAGTATGCTTCAGCCTGAGGAC 60
Query 61 ATTTTCTCCCGTCGTTGCATCTGGGTGAACGGGCCGGTCATCGTCGGTGCTGGCCCATCA 120
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 61 ATTTTCTCCCGTCGTTGCATCTGGGTGAATGGGCCTGTCATCGTCGGTGCTGGCCCATCA 120
Query 121 GGCCTAGCTGTCGCGGCCGACCTGAAACGCCAAGAAGTTCCGTTTATAATCCTCGAGCGA 180
|||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GGCCTAGCTGTCGCCGCCGACCTGAAACGCCAAGAAGTTCCGTTTGTAATCCTCGAGCGA 180
Query 181 GCTAACTGCATAGCTTCTCTGTGGCAAAACAGAACCTATGATCGTCTCAAGCTTCATCTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTAACTGCATAGCTTCTCTGTGGCAAAACAGAACCTATGATCGTCTCAAGCTTCATCTC 240
Query 241 CCCAAGCGATTCTGTCAATTACCCAATTTACCCTTTCCGGAAGATTTCCCGGAGTATCCA 300
|| |||| ||||||||||||||||||||||||||| || || ||| ||||||||||||||
Sbjct 241 CCAAAGCAATTCTGTCAATTACCCAATTTACCCTTCCCCGAGGATATCCCGGAGTATCCA 300
Query 301 ACCAAGTACCAGTTTATTGAGTACCTTGAGTCGTACGCAACCCACTTTGATCTCCGCCCA 360
|| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 301 ACGAAGTACCAGTTTATTGAGTACCTTGAGTCCTACGCTACCCACTTTGATCTCCGCCCC 360
Query 361 AAGTTCAATGAGACTGTTCAGTCAGCTAAATATGACAAGAGGTTTGGGCTGTGGCGGGTC 420
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGTTCAATGAGACGGTCCAATCAGCTAAATATGACAAGAGGTTTGGGCTGTGGCGGGTC 420
Query 421 CAGACTGTTTTGAGAAGCGAGCTGCTCGGTTATTGTGAGTTCGAGTATATTTGCAGGTGG 480
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 CAGACTGTTTTGAGAAGCGAGCTGCTCGGTTATTGTGAGTTCGAGTATATATGCAGGTGG 480
Query 481 CTCGTGGTAGCGACCGGAGAAAATGCTGAGAAAGTGGTGCCGGAGTTTGAGGGTTTAGAA 540
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTCGTGGTGGCGACGGGAGAGAATGCTGAGAAAGTGGTGCCGGAGTTTGAGGGTTTAGAA 540
Query 541 GATTTTGGTGGTGATGTTCTTCATGCTGGTGATTACAAATCTGGTGAGAGGTACCGCGGA 600
||||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||||||
Sbjct 541 GATTTTGGTGGTGATGTTCTTCACGCTGGAGATTATAAATCCGGCGAGAGGTACCGCGGA 600
Query 601 AACCGAGTTCTGGTAGTCGGATGTGGAAACTCCGGCATGGAAGTATCTCTCGATCTAT-C 659
|| |||||||| ||||| |||||||||||||| ||||||||||| ||||| ||||||| |
Sbjct 601 AAACGAGTTCTCGTAGTTGGATGTGGAAACTCAGGCATGGAAGTCTCTCTTGATCTATGC 660
Query 660 AAACCACGATGCAAGCCCATCAATGGTCGTTCGTAGCTCCGTTCATGTATTACCGATAGA 719
|| | | ||||| |||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 661 AATC-ATGATGCGAGCCCATCAATGGTCGTTCGAAGCTCCGTTCATGTATTACCGAGAGA 719
Query 720 -GATTCTTGGGAAGTCAACGTTCGAGTTAGGTGTAACAATGATGAAATGGATGCCGGTTT 778
| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 AG-TTCTTGGGAAGTCGACGTTCGAGTTAAGTGTAACAATGATGAAATGGATGCCGGTTT 778
Query 779 GGCTTGTGGACAAGACTCTGCTCGTTCTCACAAGGTTACTTCTGGGGAACACCGATAAGT 838
|||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 779 GGCTCGTGGACAAGACTCTTCTCGTTCTCACAAGGTTACTTCTAGGGAACACCGATAAGT 838
Query 839 ACGGGCTTAAGAGGCCTGAAATGGGACCGTTAGAGCTGAAAAACACCGTAGGTAAAACTC 898
| ||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||
Sbjct 839 ATGGGCTCAAGAGGCCTGAAATTGGACCGTTAGAGCTGAAGAACACCGCAGGTAAAACTC 898
Query 899 CCGTACTAGACATCGGGGCCTTTTCAA-GAATCAAATCGGGAAAGATCAAAATCGTCCCG 957
|||| ||||||||||| ||| |||||| || ||||||| ||||||||||||||||| ||
Sbjct 899 CCGTGCTAGACATCGGAGCCATTTCAATGA-TCAAATCAGGAAAGATCAAAATCGTAGCG 957
Query 958 GGAATAGCTAAGTTTGGTCTGGGAAAGGTCGAACTCGTGGATGGTCGAGCTCTGCAGATT 1017
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 958 GGAATAGCTAAGTTTGGTCCGGGAAAGGTCGAACTCGTGGATGGTCGAGTTCTGCAGATT 1017
Query 1018 GATTCAGTCATTCTTGCCACTGGTTACAGAAGTAATGTCCCTTCATGGCTTAAGGAAAAC 1077
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1018 GATTCAGTGATTCTTGCCACTGGTTACAGAAGCAATGTCCCTTCATGGCTTAAGGAAAAC 1077
Query 1078 GACTTGGCAGAGGTTGGGATAGAGAAAAACCCATTTCCAAAAGGGTGGAAAGGGAAGGCC 1137
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 GACTTGGGTGAGATTGGGATAGAGAAAAACCCATTTCCAAAAGGGTGGAAAGGGAAGGCT 1137
Query 1138 GGGTTGTATGCGGTGGGGTTCACCGGAAGAGGACTCTCAGGTGCATCCTTCGATGCAATG 1197
|| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1138 GGATTGTATGCGGTGGGATTCACCGGAAGAGGACTCTCAGGTGCATCGTTCGATGCAATG 1197
Query 1198 AGTGTAGCTCATGATATTGCCACTAGCTGGAAAGAAGAAACTATGCAACAGATCAAAACT 1257
|||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 1198 AGTGTAGCTCATGACATTGCCAATAGCTGGAAAGAAGAAACTAAGCAACAGATCAAAACT 1257
Query 1258 GTGGCTAGTCGCCACCGTCGTTGTATTTCACACTTTTGA 1296
|| |||| |||||||||||||||||||||||||||||||
Sbjct 1258 GTCGCTACTCGCCACCGTCGTTGTATTTCACACTTTTGA 1296
> AT5G43890.1 | Symbols: YUC5, SUPER1 | Flavin-binding monooxygenase
family protein | chr5:17648857-17650131 REVERSE LENGTH=1275
Length=1275
Score = 191 bits (103), Expect = 2e-47
Identities = 486/667 (73%), Gaps = 41/667 (6%)
Strand=Plus/Plus
Query 76 TGCATCTGGGTGAACGGGCCGGTCATCGTCGGTGCTGGCCCATCAGGCCTAGCTGTCGCG 135
||||| ||||| ||||| || || |||||||| || || ||||| || ||||| | ||
Sbjct 55 TGCATTTGGGTTAACGGTCCTGTAATCGTCGGAGCCGGGCCATCGGGGCTAGC---CACG 111
Query 136 GCCGACCTG-AAACGCCAAGAA---GTTCCGTTTATAATCCTCGAGCGAGCTA-ACTGCA 190
|| | |||| ||| | ||| ||||| ||| | | | ||| |||| | | ||||
Sbjct 112 GCAG-CCTGCCTCCGCGAGGAAGGTGTTCCCTTTGTGGTATTGGAGAGAGC-AGATTGCA 169
Query 191 TAGCTTCTCTGTGGC-AAAACAGAACCTATGATCGTCTCAAGCTTCATCTCCCCAAGCGA 249
||||||| || |||| ||||| |||| || ||| | |||| |||||| | || ||| |
Sbjct 170 TAGCTTCACTATGGCAAAAAC-GAACTTACGATAGAATCAAACTTCATTTACCAAAGAAA 228
Query 250 -TTCTGTCAATTACCCAATTTACCCTTTCCGGAAGATTTCCCGGAGTATCCAACCAAGTA 308
|| |||||||||||||| | ||||| |||||||| | |||||| ||||||| ||| |
Sbjct 229 GTT-TGTCAATTACCCAAAATGCCCTTCCCGGAAGACTACCCGGAATATCCAA-CAA-AA 285
Query 309 C--CAGTTTATTGAGTACCTTGAGTCGTACGCAACCCACTTTG--ATCTCCGCCCAAAGT 364
| ||||| || |||||||||||||| ||||||| | | || | || | | || |||
Sbjct 286 CGACAGTTCATCGAGTACCTTGAGTCCTACGCAAACAAATTCGAAAT-TAC-TCCTCAGT 343
Query 365 TCAATGAGACTGTTCAGTCAGCTAAATATGACAAGAGGTTTGGGCTGTGGCGGGTCCAGA 424
|||| ||| ||| ||||| ||| ||| ||| ||| ||| || ||||| || |||
Sbjct 344 TCAACGAGTGTGTCCAGTCTGCTCGATACGACGAGACAAGTGGTCTCTGGCGCATCAAGA 403
Query 425 CTGTTTTGAGAAGCGAGC-TGCTCGGTTATTGTGAGTTCGAGTATATTTGCAGGTGGCTC 483
| | | | | ||||| | | ||| | || ||||| ||| ||||| |
Sbjct 404 C----AACATCTTC-CTCTTCCTCGG-GGTCG-GAGATGGAATATATCTGCCGGTGGTTA 456
Query 484 GTGGTAGCGACCGGAGAAAATGCTGAGAAAGTGGTGCCGGAGTTTGA-GGGTTTAGAA-- 540
||||| ||||| |||||||| || |||||||| || || ||| | || ||| | | ||
Sbjct 457 GTGGTGGCGACGGGAGAAAACGCGGAGAAAGTTGTTCCAGAGATCGATGGGCTCACAACG 516
Query 541 GATTTTGGTGGTGATGTTCTTCATGCT-G-GTGATTACAAATCTGGTGAGAGGTACCGCG 598
|| |||| || || || | || || | |||| |||||||| || |||| ||| | |
Sbjct 517 GAGTTTGAAGGCGAGGTGATCCA--CTCGTGTGAGTACAAATCCGGCGAGAAATACAGAG 574
Query 599 GAAACCGAGTTCTGGTAGTCGGATGTGGAAACTCCGGCATGGAAGTATCTCTCGATCTAT 658
|||| | ||||| || ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 575 GAAAGAGTGTTCTTGTCGTCGGATGTGGAAACTCCGGCATGGAAGTCTCTCTTGATCTCG 634
Query 659 CAAACCACGATGC-AA-GCCCATCAATGGTCGTTCGTAGCTCCGTTCATGTATTACCGAT 716
|||| ||| |||| || || ||| ||||| ||||||||||| |||||||| ||||| |
Sbjct 635 CAAATCACAATGCTAATGC--ATCCATGGTTGTTCGTAGCTCGGTTCATGTGTTACCAAG 692
Query 717 AGAGATT 723
|||||||
Sbjct 693 AGAGATT 699
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63754692150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5