BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg901143 Length=861 Score E Sequences producing significant alignments: (Bits) Value AT2G33250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1164 0.0 > AT2G33250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04310.1); Has 41 Blast hits to 41 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14097432-14098711 FORWARD LENGTH=955 Length=955 Score = 1164 bits (630), Expect = 0.0 Identities = 804/883 (91%), Gaps = 31/883 (4%) Strand=Plus/Plus Query 1 ATGGCGGATAGAGGAGCTCTTTTGTTACCGCGAGCTTCTATCAT-TCTTAGTTTCTCAAA 59 |||||||||||||||||||||| ||||||||||||||||| | | ||||||||||||||| Sbjct 23 ATGGCGGATAGAGGAGCTCTTTCGTTACCGCGAGCTTCTA-CTTATCTTAGTTTCTCAAA 81 Query 60 CCTCCATGTCTGGCGATTCCAAAACCCTAGATCTTATCTTCTCC-CTCGTTCT-AATCTT 117 ||||||||||||||||||||| |||||||||||||||| || || |||||||| || || Sbjct 82 CCTCCATGTCTGGCGATTCCACAACCCTAGATCTTATCCTC-CCTCTCGTTCTCAA-CTC 139 Query 118 CTCTGTTTCTCTTCTTCACGCTCTAGAGTAGCTTCGGCGGAGATAATTCAGCTGAATCGC 177 |||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||| ||| Sbjct 140 CTCTGTTTCTCTTCCTCATGCTCTAGAGTAACTTCGGCGAAGATAATTCAGCTGAACCGC 199 Query 178 CGGAGATTCAGCTATAAAATATGCGCCGCCGCGGATGACGGTAGGGGATACCGTTTGACA 237 |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 200 CGGAGATTCAGCTATAAAATATGCGCCGCCGCTGATGACGGTAGGGGATACCGTTTGACG 259 Query 238 GAAAGGGGGAAAAGGGGGAA-GAAACGGCGGGAGCTTTGGGAGGAACTCTTTGAAGATAA 296 |||| |||||||| |||||| ||| ||||||||||| ||||| ||||| ||||||||||| Sbjct 260 GAAA-GGGGAAAAAGGGGAAGGAAGCGGCGGGAGCTATGGGAAGAACTTTTTGAAGATAA 318 Query 297 TGTTGAAGAC---GACGAT---GACGA---T-GT--TGG---TGGT-G-G-TAATTTTGA 338 |||||||||| || ||| || || | || ||| |||| | | ||||||||| Sbjct 319 TGTTGAAGACGATGATGATGAAGATGATGGTGGTGGTGGAATTGGTAGTGCTAATTTTGA 378 Query 339 CCTGTGGAAGATTTTAGAGGAAATTGTAGATAATGTCTGGATTTTAAAGGCATTCAGATC 398 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 379 CCTGTGGAAGATCTTAGAGGAAATTGTAGATAATGTTTGGATTTTAAAGGCATTCAAATC 438 Query 399 GTATGGATATCTCCTGCCGTTCATCATCTTATCGCTTTTCTTCAGCACCGGACCCAAAGC 458 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 439 GTATGGATATCTCCTCCCATTCATCATCTTATCGCTTTTCTTCAGCACCGGACCCAAAGC 498 Query 459 CTTCCTCGTGTCACTATCCGTAGCCATCGTGCCATCATTGTTGTTTTACGCATTCCAGAA 518 ||||||||||||||| ||||||| |||| |||||||||||| ||||| || |||||||| Sbjct 499 TTTCCTCGTGTCACTAGCCGTAGCAATCGGGCCATCATTGTTATTTTATGCGTTCCAGAA 558 Query 519 GTTGATTGGTTGGGATAAACGCAGAAAAACATCGATAGCAAATCAATTCGGGATagagga 578 ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 559 GTTGATTGGTTGGGATAAACGCAGAGGTACATCAATAGCAAATCAATTCGGGATAGAGGA 618 Query 579 agaagaagaagaagtggagagaagaagGAGCAGGATTCGATACAACCCATCAACCGTTAG 638 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 619 AGAAGAAGAAGAAGTGGAGAGAAGTAGTAGCAGGATTCGATACAACCCATCAACCGTTAG 678 Query 639 AAACAATGCCAATGGCCGCAGAGTTAACCGTAGTTCAGCTGGAATGGCTTCTAAGTTTGG 698 |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 679 AAACAATGTCAATGGCCGTGGAGTTAACCGTAGTTCAGCTGGAATGGCTTCTAAGTTTGG 738 Query 699 TGGGTGGGACGAGTTAGACGGGCTAGGTACCA---TTCCCGAACAGCCAACaagcgaacc 755 |||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||| Sbjct 739 TGGGTGGGACGAGTTAGACGGGCTTGGTACCACCATTCCCGAACGGCCAACAAGCGAACC 798 Query 756 gaagaagaaaccgttaacaaagaggaagagagtaagaagagagaaag-cagcagaacCAC 814 |||||||||||||||| | ||||||||||||||||||||||| |||| ||||||||||| Sbjct 799 GAAGAAGAAACCGTTACCGAAGAGGAAGAGAGTAAGAAGAGA-AAAGGCAGCAGAACCAT 857 Query 815 TATTGTTGAGATTATTGGTGTCCTTGTTTCCTTTCTTAAGCAC 857 ||||||||||||| |||||||| |||||||| ||||||||||| Sbjct 858 TATTGTTGAGATTGTTGGTGTCTTTGTTTCCATTCTTAAGCAC 900 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41995746892 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5