BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901143
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1164 0.0
> AT2G33250.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures;
EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G04310.1);
Has 41 Blast hits to 41 proteins in 12 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr2:14097432-14098711
FORWARD LENGTH=955
Length=955
Score = 1164 bits (630), Expect = 0.0
Identities = 804/883 (91%), Gaps = 31/883 (4%)
Strand=Plus/Plus
Query 1 ATGGCGGATAGAGGAGCTCTTTTGTTACCGCGAGCTTCTATCAT-TCTTAGTTTCTCAAA 59
|||||||||||||||||||||| ||||||||||||||||| | | |||||||||||||||
Sbjct 23 ATGGCGGATAGAGGAGCTCTTTCGTTACCGCGAGCTTCTA-CTTATCTTAGTTTCTCAAA 81
Query 60 CCTCCATGTCTGGCGATTCCAAAACCCTAGATCTTATCTTCTCC-CTCGTTCT-AATCTT 117
||||||||||||||||||||| |||||||||||||||| || || |||||||| || ||
Sbjct 82 CCTCCATGTCTGGCGATTCCACAACCCTAGATCTTATCCTC-CCTCTCGTTCTCAA-CTC 139
Query 118 CTCTGTTTCTCTTCTTCACGCTCTAGAGTAGCTTCGGCGGAGATAATTCAGCTGAATCGC 177
|||||||||||||| ||| ||||||||||| |||||||| |||||||||||||||| |||
Sbjct 140 CTCTGTTTCTCTTCCTCATGCTCTAGAGTAACTTCGGCGAAGATAATTCAGCTGAACCGC 199
Query 178 CGGAGATTCAGCTATAAAATATGCGCCGCCGCGGATGACGGTAGGGGATACCGTTTGACA 237
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 200 CGGAGATTCAGCTATAAAATATGCGCCGCCGCTGATGACGGTAGGGGATACCGTTTGACG 259
Query 238 GAAAGGGGGAAAAGGGGGAA-GAAACGGCGGGAGCTTTGGGAGGAACTCTTTGAAGATAA 296
|||| |||||||| |||||| ||| ||||||||||| ||||| ||||| |||||||||||
Sbjct 260 GAAA-GGGGAAAAAGGGGAAGGAAGCGGCGGGAGCTATGGGAAGAACTTTTTGAAGATAA 318
Query 297 TGTTGAAGAC---GACGAT---GACGA---T-GT--TGG---TGGT-G-G-TAATTTTGA 338
|||||||||| || ||| || || | || ||| |||| | | |||||||||
Sbjct 319 TGTTGAAGACGATGATGATGAAGATGATGGTGGTGGTGGAATTGGTAGTGCTAATTTTGA 378
Query 339 CCTGTGGAAGATTTTAGAGGAAATTGTAGATAATGTCTGGATTTTAAAGGCATTCAGATC 398
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 379 CCTGTGGAAGATCTTAGAGGAAATTGTAGATAATGTTTGGATTTTAAAGGCATTCAAATC 438
Query 399 GTATGGATATCTCCTGCCGTTCATCATCTTATCGCTTTTCTTCAGCACCGGACCCAAAGC 458
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 439 GTATGGATATCTCCTCCCATTCATCATCTTATCGCTTTTCTTCAGCACCGGACCCAAAGC 498
Query 459 CTTCCTCGTGTCACTATCCGTAGCCATCGTGCCATCATTGTTGTTTTACGCATTCCAGAA 518
||||||||||||||| ||||||| |||| |||||||||||| ||||| || ||||||||
Sbjct 499 TTTCCTCGTGTCACTAGCCGTAGCAATCGGGCCATCATTGTTATTTTATGCGTTCCAGAA 558
Query 519 GTTGATTGGTTGGGATAAACGCAGAAAAACATCGATAGCAAATCAATTCGGGATagagga 578
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 559 GTTGATTGGTTGGGATAAACGCAGAGGTACATCAATAGCAAATCAATTCGGGATAGAGGA 618
Query 579 agaagaagaagaagtggagagaagaagGAGCAGGATTCGATACAACCCATCAACCGTTAG 638
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 619 AGAAGAAGAAGAAGTGGAGAGAAGTAGTAGCAGGATTCGATACAACCCATCAACCGTTAG 678
Query 639 AAACAATGCCAATGGCCGCAGAGTTAACCGTAGTTCAGCTGGAATGGCTTCTAAGTTTGG 698
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 679 AAACAATGTCAATGGCCGTGGAGTTAACCGTAGTTCAGCTGGAATGGCTTCTAAGTTTGG 738
Query 699 TGGGTGGGACGAGTTAGACGGGCTAGGTACCA---TTCCCGAACAGCCAACaagcgaacc 755
|||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||
Sbjct 739 TGGGTGGGACGAGTTAGACGGGCTTGGTACCACCATTCCCGAACGGCCAACAAGCGAACC 798
Query 756 gaagaagaaaccgttaacaaagaggaagagagtaagaagagagaaag-cagcagaacCAC 814
|||||||||||||||| | ||||||||||||||||||||||| |||| |||||||||||
Sbjct 799 GAAGAAGAAACCGTTACCGAAGAGGAAGAGAGTAAGAAGAGA-AAAGGCAGCAGAACCAT 857
Query 815 TATTGTTGAGATTATTGGTGTCCTTGTTTCCTTTCTTAAGCAC 857
||||||||||||| |||||||| |||||||| |||||||||||
Sbjct 858 TATTGTTGAGATTGTTGGTGTCTTTGTTTCCATTCTTAAGCAC 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5