BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901145
Length=1317
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33260.1 | Symbols: | Tryptophan/tyrosine permease | chr2:1... 2139 0.0
> AT2G33260.1 | Symbols: | Tryptophan/tyrosine permease | chr2:14100840-14102252
REVERSE LENGTH=1311
Length=1311
Score = 2139 bits (1158), Expect = 0.0
Identities = 1259/1309 (96%), Gaps = 2/1309 (0%)
Strand=Plus/Plus
Query 10 GATGATTTGGAGATTACACATGAAACGAAGAAGCAAAAGAGTTTCTGGGCTGCCGTTAGT 69
||||||||||||||||| || |||||||||||| ||||||||| |||||||||||||||
Sbjct 4 GATGATTTGGAGATTACCCACGAAACGAAGAAGGGAAAGAGTTTTTGGGCTGCCGTTAGT 63
Query 70 TTGATCATCGGAACCGCCGTTGGTCCCGGAATGCTCGGCCTCCCAGCTGCAACTATCAGA 129
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 64 TTGATCATCGGAACAGCCGTTGGTCCAGGAATGCTCGGCCTCCCAGCTGCAACTATCAGA 123
Query 130 TCTGGTTCAATCCCATCGACCATTGCTTTACTTTGTTCTTGGGTTTACGTCATTTCCTCT 189
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 124 TCTGGTTCTATCCCATCGACCATTGCTTTACTTTGTTCTTGGGTTTACGTCATTTCCTCT 183
Query 190 ATTCTTCTCGTGGCTGAGCTCAGCTTTGCTGCTATGGAAGAAGACAATGCAGCAGAGGTT 249
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 184 ATTCTTCTCGTGGCTGAGCTCAGCTTTGCAGCAATGGAAGAAGACAATGCAGCAGAGGTT 243
Query 250 AGCTTCACAGGGCTTGCAACTAAATCCTTTGGGAATAAATTTGGAGTTTTTGTGGCTTTT 309
|| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 244 AGTTTCACAGGACTTGCAACTAAATCCTTTGGGAACAAATTTGGAGTTTTCGTGGCTTTT 303
Query 310 GTGTATGCTTCACTGAGTTTCTCTTTGATGGTTGCTTGTGTCTCGGGTATTGGCTCCATT 369
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GTGTATGCTTCACTAAGTTTCTCTTTGATGGTTGCTTGTGTCTCGGGTATTGGCTCCATT 363
Query 370 GTGTCTCAATGGTTTCCTTAC-ATGAATCCACTCTTGGCCAATGCTATATTTCCTCTAGT 428
||||||||||||||||||| | ||||||||| | ||||||||||||||||| ||||||||
Sbjct 364 GTGTCTCAATGGTTTCCTT-CAATGAATCCATTTTTGGCCAATGCTATATTCCCTCTAGT 422
Query 429 TTCTGGAGTCTTGATTGGGTTTTTCCCTTTCGATGCCATTGATTTCACCAACAGGGGTCT 488
||| ||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 423 TTCCGGAATCTTGATCGGGTTTTTCCCTTTCAATGCCATTGATTTCACCAACAGGGGTCT 482
Query 489 CTGCTTCCTCATGCTCTTCTCTATAACTTCACTTGTGGCCATTGGTTTATCTGTGGCTAG 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 CTGCTTCCTCATGCTCTTCTCTATAACTTCACTTGTGGCCATTGGTTTATCTGTGGCTAG 542
Query 549 GTCCAATGTGTTAGCCTCATTTGGTCAATCATGTTGGAAAGTCTCGACGGTTTTACCCGC 608
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 543 GTCCAATGTGTTAGCCTCATTTGGTCAATCATGTTGGAAAGTCTCCATGGTTTTACCCGC 602
Query 609 GGTTCCTGTTATGGTACTGACACTAGGGTTTCATGTCATCACTCCTTTCATATGCAATCT 668
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 603 GGTTCCTGTTATGGTACTGACACTAGGGTTTCATGTGATCACGCCTTTCATATGCAATCT 662
Query 669 CGCAGGGGATTCGGTTTCAGATGCTCGGAGAGCCATTCTTGTTGGCGGTGTTGTGCCATT 728
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 663 CGCTGGGGATTCGGTTTCAGATGCTCGGAGAGCCATTCTTGTAGGCGGTGTTGTGCCATT 722
Query 729 GGCTATGGTGTTGTCTTGGAATCTAATTGTTTTGGGGCTTGCAAAAATCACTGTGCCTGC 788
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 723 GGCTATGGTGTTGTCTTGGAATCTAATTGTTTTGGGGCTTGCAAGAATCACTGTGCCTGC 782
Query 789 TGTACCTTCTTCATCCATTGACCCAATCTCTCTTCTTCTATCTGTGAACCCTTCTGCTTT 848
|| |||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 783 TGCACCTTCTTCAACCATTGACCCAATCTCTCTTCTTCTATCTGTGAATCCTTCTGCCTT 842
Query 849 ATCTGCTGTTCAAGGCTTTGCTTTCTCAGCCTTAGCTACCAGTTTAATCGGATACGCTGT 908
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 843 ATCTGCTGTTCAAGGCTTTGCTTTCTCAGCCTTAGCTACCAGTTTAATCGGATATGCTGT 902
Query 909 TAGCTTCCCGAAACAGCTCCTCGATACATGGAAGCTTGTGTCTAAGAAATCAAATGGAAA 968
|||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 903 TAGCTTCCCGAAACAGCTCCTCGACACATGGAAGCTTGTGTCTAAGCAATCAAATGGAAA 962
Query 969 TGGAAGACTTGGGTCTGTAAGTTTCTCATCGAAAGAGGGTAATAAGAGAACTAATGGGAG 1028
|||||||||||||||||||||||||||||| |||||| || ||| |||||||||||||||
Sbjct 963 TGGAAGACTTGGGTCTGTAAGTTTCTCATCAAAAGAGCGTGATAGGAGAACTAATGGGAG 1022
Query 1029 AGCCTCATACAGTGAACCACCAAGAGCTCGTGATGGGTTTGAAGCAGTAGTGATGCTATT 1088
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1023 AGCCTCATACAATGAACCAGCAAGAGCTCGTGATGGGTTTGAAGCAGTAGTGATGCTATT 1082
Query 1089 TGTCCTTGGAGTTCCAGCTCTAATTGCAACATTCTTTCCCTCAACGTTCTCGAGAGCTCT 1148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 TGTCCTTGGAGTTCCAGCTCTAATTGCAACATTCTTTCCCTCAACGTTCTCGAGAGCTCT 1142
Query 1149 GGATTTTGCTGGTGTTTATGCAAACTGTTTCCTCTTTGGTGTCCTGCCTCCTGCAATGGC 1208
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1143 GGATTTTGCCGGTGTTTATGCAAACTGTTTCCTCTTTGGTGTCCTGCCTCCTGCAATGGC 1202
Query 1209 TTATATTCAACAGTCCAGAAACAAGCTCAGGTCATGGGTTCTTCCCGGAGGCAACTTTAC 1268
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 1203 TTATATTCAACAGTCCAGAAAGAAGCTCAGGCCATGGGTTCTTCCCGGAGGCAACTTTAC 1262
Query 1269 CTTGTTGATCTTATTCGTTATCGCCATTATTCTGGGAATATGGCATTAG 1317
||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1263 CTTGTTGATCTTATTTGCAATCGCCATTATTCTGGGAATATGGCATTAG 1311
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64808903595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5