BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901152
Length=915
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33330.1 | Symbols: PDLP3 | plasmodesmata-located protein 3 ... 1507 0.0
AT1G04520.1 | Symbols: PDLP2 | plasmodesmata-located protein 2 ... 767 0.0
> AT2G33330.1 | Symbols: PDLP3 | plasmodesmata-located protein
3 | chr2:14122890-14125137 REVERSE LENGTH=1315
Length=1315
Score = 1507 bits (816), Expect = 0.0
Identities = 882/915 (96%), Gaps = 0/915 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTTTTATTCACAAAAGCAGCTCTTGTCACTTTACATCATCATCATGGCTCTGTTC 60
||||| |||||||||| |||||||| |||| ||||||||||||||||||||||||||||
Sbjct 110 ATGGGGTTTTATTCACTGAAGCAGCTTTTGTTACTTTACATCATCATCATGGCTCTGTTC 169
Query 61 TCAGATCTCAAGCAAGCAAAATCGTCTTCACCAGAGTACACAAACCTAATCTACAAAGGT 120
||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 170 TCAGATCTCAAGCTAGCAAAATCTTCTTCACCAGAGTACACGAACCTAATCTACAAAGGT 229
Query 121 TGTGCAAGACAGAGATTATCAGATCCATCTGGTTTATACTCACAAGCTCTCTCTGCAATG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 230 TGTGCAAGACAGAGATTATCAGATCCATCTGGTTTATACTCACAAGCTCTCTCTGCAATG 289
Query 181 TATGGCTTATTGGTTTCTCAATCAACGAAAACAAGATTCTACAAAACCACAACTGGAACC 240
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 TATGGCTTATTGGTTACTCAATCAACGAAAACAAGATTCTACAAAACCACAACTGGAACA 349
Query 241 ACAAGCCAAACAAGCGTCACTGGTCTTTTCCAGTGTAGAGGAGATTTAAGTAACAACGAT 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 ACAAGCCAAACAAGCGTCACTGGTCTTTTCCAGTGTAGAGGAGATTTAAGTAACAACGAC 409
Query 301 TGTTACAACTGTGTTAGTCGTCTTCCTGTTCTCTCTGGTAAGCTCTGCGGCAAAACCATT 360
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 410 TGTTACAACTGTGTTAGTCGTCTTCCTGTTCTCTCTGGTAAGCTCTGTGGCAAAACCATT 469
Query 361 GCCGCTAGGGTTCAGCTCTCCGGCTGTTACCTTCTCTATGAAATCTCTGGCTTTGCCCAA 420
|| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 470 GCTGCTAGAGTTCAGCTCTCCGGCTGTTATCTTCTCTATGAAATCTCTGGCTTTGCCCAA 529
Query 421 ATTTCAGGAATGGAGTTGTTATTCAAGACATGTGGGAAGAACAACGTCGCCGGAACAGGA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 530 ATTTCAGGAATGGAGTTGTTATTCAAGACATGTGGGAAGAACAACGTCGCCGGGACAGGA 589
Query 481 TTCGAGCAGAGAAGAGACACAGCGTTCGGGGTAATGCAAAACGGCGTCGTTCAAGGACAC 540
||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 590 TTCGAACAGAGAAGAGACACAGCTTTCGGGGTGATGCAAAACGGCGTCGTTCAAGGTCAC 649
Query 541 GGCTTCTACGCGACGACATACGAATCGGTTTACGTTTTAGGACAATGCGAAGGCGATTTA 600
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 650 GGCTTCTACGCAACGACATACGAATCGGTTTACGTTTTAGGACAATGCGAAGGCGATATA 709
Query 601 GGTGATTCAGATTGTAGCGGTTGCATAAAAAACGCGTTACAGAGAGCTCAAGTAGAATGT 660
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 710 GGCGATTCAGATTGTAGCGGTTGCATAAAAAACGCGTTACAGAGAGCTCAAGTCGAATGT 769
Query 661 GGAAGCTCAATCTCTGGTCAGATATATCTTCATAAGTGTTTTGTCGCTTATAGTTTCTAC 720
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 770 GGAAGCTCAATATCTGGTCAGATATATCTTCATAAGTGTTTTGTCGGTTATAGTTTCTAC 829
Query 721 CCAAATGGTGTTCCCAAGAGGTCTTCTCCTTATCCTAGCTCTGGCtcttcgacttcgtct 780
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||
Sbjct 830 CCAAATGGTGTTCCCAAGAGATCTTCTCCTTATCCTAGCTCTGGCTCTTCGGGTTCTTCT 889
Query 781 tcttcttcttcttcAGCAGGAACAACAGGCAAAACGGTGGCAATAATAGTAGGAGGAACA 840
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 TCTTCTTCATCTTCTTCAGGAACAACAGGCAAAACGGTGGCAATAATAGTAGGAGGAACA 949
Query 841 GCTGGTGTTGGATTTCTTGTCATTTGCTTACTTTTCGTCAAAAACTTGATGAAGAAGAAA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 GCTGGTGTTGGATTTCTTGTCATTTGCTTACTTTTCGTCAAAAACTTGATGAAGAAGAAA 1009
Query 901 TATGACGATTATTGA 915
|||||||||||||||
Sbjct 1010 TATGACGATTATTGA 1024
> AT1G04520.1 | Symbols: PDLP2 | plasmodesmata-located protein
2 | chr1:1231578-1234032 FORWARD LENGTH=1443
Length=1443
Score = 767 bits (415), Expect = 0.0
Identities = 757/914 (83%), Gaps = 56/914 (6%)
Strand=Plus/Plus
Query 39 CATCATCATCATG-G-CT-CTG-TTCTCAGATCTCAA-G-C-AAGCAAAATCGT-CTTCA 90
|||||| || ||| | || ||| ||| |||||||||| | | || |||||| | || ||
Sbjct 304 CATCATGATGATGTGTCTACTGTTTC-CAGATCTCAATGTCGTAGTAAAATC-TGCTACA 361
Query 91 CCAGAGTACACAAACC-TAATCTACAAAGGTTGTGCAAGAC-AGAGATTATCAGATCCAT 148
| || ||||| |||| ||||||||||||| |||||||||| | | ||| ||||||||||
Sbjct 362 ACGGAATACAC-AACCTTAATCTACAAAGGATGTGCAAGACAACA-ATTCTCAGATCCAT 419
Query 149 CTGGTTTATACTCACAAGCTCTCTCTGCAATGTAT-GGCTTATTGGTTTCTCAATCAACG 207
|||||||||||||||||||||||||||| |||| | |||| |||||| ||||| || ||
Sbjct 420 CTGGTTTATACTCACAAGCTCTCTCTGCTATGT-TCGGCTCATTGGTCTCTCAGTCTACT 478
Query 208 AAAACAAGATTCTACAAAACCACAACTGGAAC---CACAAGCCAAACAAGCGTCACTGGT 264
||||| ||||||||||| |||||||| ||||| ||||| ||| ||| ||||||||
Sbjct 479 AAAACCAGATTCTACAAGACCACAACAGGAACAAGCACAA-CCA--CAA---TCACTGGT 532
Query 265 CTTTTCCAGTGTAGAGGAGATTTAAGTAACAACGATTGTTACAACTGTGTTAGTCGTCTT 324
|| ||||||||||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 533 CTGTTCCAGTGTAGAGGAGATTTAAGTAACCATGACTGTTACAACTGTGTTAGTCGTCTT 592
Query 325 CCTGTTCTCTCTGGTAAGCTCTGCGGCAAAACCATTGCCGCTAGGGTTCAGCTCTCCGGC 384
||||||||||| | ||||| || |||||||||||||| | || ||||| || ||||||
Sbjct 593 CCTGTTCTCTCCGACAAGCTATGTGGCAAAACCATTGCTTCAAGAGTTCAACTTTCCGGC 652
Query 385 TGTTACCTTCTCTATGAAATCTCTGGCTTTGCCCAAATTTCAGGAATGGAGTTGTTATTC 444
||||| |||||||||||| | ||||||||| | ||||||||||| |||||| || | |||
Sbjct 653 TGTTATCTTCTCTATGAAGTTTCTGGCTTTTCTCAAATTTCAGGGATGGAGATGCTGTTC 712
Query 445 AAGACATGTGGGAAGAACAACGTCGCCGGAACAGGATTCGA-GCAGAGAAGAGACACAGC 503
||||| ||||||||||||||| ||||||||||||| ||||| | ||||||||||||| ||
Sbjct 713 AAGACTTGTGGGAAGAACAACATCGCCGGAACAGGGTTCGAAG-AGAGAAGAGACACGGC 771
Query 504 GTTCGGGGTAATGCAAAACGGCGTCGT-TCAAGGACACGGCTTCTACGCGACGACATACG 562
||||||||| |||||||||||||| || ||| || || || |||||||| || || ||||
Sbjct 772 GTTCGGGGTGATGCAAAACGGCGTAGTATCA-GGCCATGGATTCTACGCTACTACGTACG 830
Query 563 AATCGGTTTACGTTTTAGGACAATGCGAAGGCGATTTAGGTGATTCAGATTGTAGCGGTT 622
|||| || ||||||||||||||||||||||| ||| | || || | ||||||||||| |
Sbjct 831 AATCTGTCTACGTTTTAGGACAATGCGAAGGAGATGTCGGAGACACCGATTGTAGCGGAT 890
Query 623 GCATAAAAAACGCG-TTACAGAGAGCTCAAGTAGAATGTGGAAGCTCAATCTCTGGTCAG 681
| | || ||||| || ||| |||||| || |||||||||||||||||||| || |||
Sbjct 891 GTGTTAAGAACGCACTTG-AGAAAGCTCAGGTGGAATGTGGAAGCTCAATCTCCGGACAG 949
Query 682 ATATATCTTCATAAGTGTTTTGTCGCTTATAGTT-TCTACCCAAATGGTGTTCCCAAGAG 740
|| ||||| ||||||||||| |||||||||||| | |||||||||||||| |||| ||
Sbjct 950 ATTTATCTACATAAGTGTTTCATCGCTTATAGTTAT-TACCCAAATGGTGTCCCCA-GAA 1007
Query 741 G-TCTTCT-C--CTT-ATCCTAGCTCTGGC-tcttcgacttc-g--tcttc---ttct-- 786
| |||||| | ||| ||| | | ||| | || || | ||| | ||||| |||
Sbjct 1008 GATCTTCTTCTTCTTCATCTTCG-TCTT-CATCCTCCAGTTCTGGCTCTTCAAATTCAGA 1065
Query 787 tc-ttc---ttc-AGCAGGAACAACAGGCAAAACGGTGGCAATAATAGTAGGAGGAACAG 841
|| ||| ||| | ||||| ||||||| || |||||||||||||||||||||||| |||
Sbjct 1066 TCCTTCCACTTCTA-CAGGAGCAACAGGGAAGACGGTGGCAATAATAGTAGGAGGAGCAG 1124
Query 842 CTGGTGTTGGATTTCTTGTCATTTGCTTACTTTTCGTCAAAAACTTGATGAAGAAGAAAT 901
|||||||||| ||||||||||||||||| ||||| | |||||||||||||| |||||||
Sbjct 1125 CTGGTGTTGGCTTTCTTGTCATTTGCTTGCTTTTTGCCAAAAACTTGATGAGGAAGAAAC 1184
Query 902 ATGACGATTATTGA 915
||||||| ||||||
Sbjct 1185 ATGACGACTATTGA 1198
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44708390830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5