BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901193

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33740.2 | Symbols: CUTA | Nitrogen regulatory PII-like, alp...   837    0.0  


> AT2G33740.2 | Symbols: CUTA | Nitrogen regulatory PII-like, alpha/beta 
| chr2:14269581-14271723 FORWARD LENGTH=758
Length=758

 Score =  837 bits (453),  Expect = 0.0
 Identities = 517/549 (94%), Gaps = 0/549 (0%)
 Strand=Plus/Plus

Query  1    ATGGCTTCGTCTCTGTGCACTAGAGTATCGGCGGTAATCGGATCTCGACGGAGTTTTCCG  60
            ||||||||||||||   ||||||| |||||||||||||||||||||||||||||||||||
Sbjct  10   ATGGCTTCGTCTCTCACCACTAGATTATCGGCGGTAATCGGATCTCGACGGAGTTTTCCG  69

Query  61   ATCGTCGGCGCGTTTTGCGTGCTGTCAActctctcaatctcttctctttcttcgtcttct  120
            |||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct  70   ATCGTCGGAGCGTTTTGCGTTCTGTCAACTCTCTCAATCTCTTCTCTTTCTTCTTCATCT  129

Query  121  tccttcAAATCGGGTTGTGCACAGTCCTTCTCTGTTGTTCCTCTCTTAAGGTCGAAGTTT  180
             ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  130  CCCTTCAAATCGGGTTGTGCACAGTCTTTCTCTGTTGTTCCTCTCTTAAGGTCTAAGTTT  189

Query  181  AGTAGTAAGGCTTTTTCTTCGTCGATCAGAATGGAGGAGAGCAGCAAAACTGTGCCCAGC  240
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  190  AGCAGTAAGGCTTTTTCTTCGTCGATCAGAATGGAGGAGAGCAGCAAAACTGTGCCCAGC  249

Query  241  ATTGTTGTCTATGTCACTGTTCCTAACAGAGAAGCAGGAAAGAAGTTGGCTAACAGCATA  300
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| 
Sbjct  250  ATTGTTGTCTATGTCACTGTTCCTAACAGAGAAGCAGGGAAGAAGTTGGCTAACAGCATT  309

Query  301  GTCCAAGAAAAGCTTGCAGCGTGTGTGAACATTGTGCCAGGCATTGAATCGGTATACGAA  360
            ||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| 
Sbjct  310  GTCCAGGAAAAGCTTGCAGCGTGTGTGAACATTGTGCCTGGCATTGAATCGGTGTACGAG  369

Query  361  TGGGAGGGGAAGGTTCAGAGTGACTCCGAGGAGCTCCTAATAATTAAAACAAGGCAATCT  420
            ||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| 
Sbjct  370  TGGGAGGGGAAGGTTCAGAGTGATTCAGAGGAGCTCCTGATAATCAAAACAAGGCAATCC  429

Query  421  CTTCTTGAGTCTCTAACCGAGCATGTCAATGCAAATCACGAATACGATGTGCCAGAAGTA  480
            ||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  430  CTTCTAGAACCTCTAACCGAGCATGTCAATGCAAATCACGAATACGATGTGCCAGAAGTA  489

Query  481  ATTGCAATGCCGATAACTGGTGGGAGCGACAAGTATCTAGAATGGTTGAAAAACAGTTCA  540
            |||||  |||| || ||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct  490  ATTGCGTTGCCCATCACTGGTGGGAGCGACAAGTATTTAGAATGGTTGAAAAACAGTACA  549

Query  541  AGGAACTGA  549
            |||||||||
Sbjct  550  AGGAACTGA  558



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26322693028


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5