BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901203

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33210.1 | Symbols: HSP60-2 | heat shock protein 60-2 | chr2...   534    3e-151


> AT2G33210.1 | Symbols: HSP60-2 | heat shock protein 60-2 | chr2:14074907-14078731 
REVERSE LENGTH=2107
Length=2107

 Score =  534 bits (289),  Expect = 3e-151
 Identities = 389/435 (89%), Gaps = 15/435 (3%)
 Strand=Plus/Plus

Query  111   CGTAGAAGAGGGTATTGTTCCA---GGTGGTGTTGCTCTTTTGTATGCTTCAAAAGAACT  167
             |||||| |||||||||||||||   |||||||||||||||||||||||||| ||||||||
Sbjct  1474  CGTAGAGGAGGGTATTGTTCCAGGTGGTGGTGTTGCTCTTTTGTATGCTTCGAAAGAACT  1533

Query  168   TGAGAAGCTTTCCACAGCTAACTTTGATCAGAAAATCGGTGTTCAAATAATTCAAAACGC  227
             |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct  1534  TGAGAAGCTTTCCACAGCTAACTTTGATCAGAAAATTGGTGTTCAAATCATTCAAAACGC  1593

Query  228   CCTCAAGACACATGTTTACACGATTGCTTCCAATGCTGGAGTAGAGGGTGCTGTTATCGT  287
              |||||||||| |||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct  1594  ACTCAAGACACCTGTTTACACGATTGCTTCCAATGCTGGAGTCGAGGGTGCAGTTGTCGT  1653

Query  288   AGGCAAGCTGTTGGAGCAAGATAATCCTGACCTTGGTTATGATGCCGCTAAAG-A-A-TA  344
             ||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| | | ||
Sbjct  1654  AGGCAAGCTTTTGGAACAAGATAATCCTGACCTTGGTTATGATGCTGCTAAAGGAGAATA  1713

Query  345   CGTCGATATGGTAAAGTCTGGTATTATTGACCCTTTGAAAGTGATCAGAACTGCATTGGT  404
              || || ||| ||||| |||||||||| || |||||||||||||||||||| ||||| ||
Sbjct  1714  TGTGGACATGATAAAGGCTGGTATTATCGATCCTTTGAAAGTGATCAGAACCGCATTAGT  1773

Query  405   TGATGCTGCA-GTGT--CGTCTTTGTTGACAACAACGGAAGCAGTTGTGACTGAGATTCC  461
             |||||||||| ||||  |||||||||||||||| ||||||||||||||||||||||||||
Sbjct  1774  TGATGCTGCAAGTGTTTCGTCTTTGTTGACAACGACGGAAGCAGTTGTGACTGAGATTCC  1833

Query  462   AACGAAAGAGAAGGAAGCGTCTCCAGGTATGGACGGTGG---CATGGGTGGCATGGGAGG  518
             ||||||||||  | | || ||||| ||||||| ||||||   |||||| |||||||| ||
Sbjct  1834  AACGAAAGAG--GTA-GCATCTCCGGGTATGGGCGGTGGTGGCATGGGCGGCATGGGTGG  1890

Query  519   TATGGGAGGAATGGG  533
              ||||| || |||||
Sbjct  1891  CATGGGCGGTATGGG  1905


 Score =  165 bits (89),  Expect = 4e-40
 Identities = 101/107 (94%), Gaps = 0/107 (0%)
 Strand=Plus/Plus

Query  1     ATACGATCCATGATGGAAGCGAGCACGTCTGATTATGACAAGGAGAAGTTGAAAGAAAGA  60
             |||||||||||| | ||||| ||||| |||||||||||||||||||||||| ||||||| 
Sbjct  1301  ATACGATCCATGGTTGAAGCAAGCACTTCTGATTATGACAAGGAGAAGTTGCAAGAAAGG  1360

Query  61    TTGGCTAAGCTTTCGGGTGGTGTTGCTGTACTAAAGATTGGAGGAGC  107
             |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1361  TTGGCTAAGCTTTCGGGTGGTGTTGCTGTACTAAAGATTGGAGGAGC  1407



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25719883264


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5