BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg901205

Length=264
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G33796.1 | Symbols:  | FBD-like domain family protein | chr2...   278    2e-74
  AT2G33793.1 | Symbols:  | unknown protein; Has 35333 Blast hits...   278    2e-74
  AT5G25860.1 | Symbols:  | F-box/RNI-like superfamily protein | ...   239    1e-62


> AT2G33796.1 | Symbols:  | FBD-like domain family protein | chr2:14299709-14300252 
REVERSE LENGTH=330
Length=330

 Score =  278 bits (150),  Expect = 2e-74
 Identities = 186/203 (92%), Gaps = 3/203 (1%)
 Strand=Plus/Plus

Query  43   GGACTCTGCATTGATCGAAATGAAGTGAAGGTGTTGGAGATACATGGGTTTAGTGGACGT  102
            ||| ||| |||||||||||||||||||||||||||||||||| |||||| ||| ||||||
Sbjct  28   GGAGTCTTCATTGATCGAAATGAAGTGAAGGTGTTGGAGATATATGGGTATAGAGGACGT  87

Query  103  GATAAAGAGGTCAGAGAAGTGACGTGCTTTCTGCGGGAAATGCAGTTTCTTCAAGTGATG  162
            |||| |||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||
Sbjct  88   GATAGAGAGCTCAGACAAGTGACGTGCTTTTTGCGGGAAATGCGGTTTCTTCAAGTGATG  147

Query  163  AAAGTCGAAATTGATGCTG--G-TGATAACAAGAAACTGCGACTCATCAATCACCTTCTT  219
            |||||||||||||||||||  | |||||||||||||| || |||||| ||||||||||||
Sbjct  148  AAAGTCGAAATTGATGCTGATGATGATAACAAGAAACAGCAACTCATTAATCACCTTCTT  207

Query  220  GCTCTGCCCAGACGTTCATCTAA  242
            |||||||||| ||||||||||||
Sbjct  208  GCTCTGCCCATACGTTCATCTAA  230


> AT2G33793.1 | Symbols:  | unknown protein; Has 35333 Blast hits 
to 34131 proteins in 2444 species: Archae - 798; Bacteria 
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses 
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:14296994-14300506 
FORWARD LENGTH=1401
Length=1401

 Score =  278 bits (150),  Expect = 2e-74
 Identities = 186/203 (92%), Gaps = 3/203 (1%)
 Strand=Plus/Minus

Query  43    GGACTCTGCATTGATCGAAATGAAGTGAAGGTGTTGGAGATACATGGGTTTAGTGGACGT  102
             ||| ||| |||||||||||||||||||||||||||||||||| |||||| ||| ||||||
Sbjct  1120  GGAGTCTTCATTGATCGAAATGAAGTGAAGGTGTTGGAGATATATGGGTATAGAGGACGT  1061

Query  103   GATAAAGAGGTCAGAGAAGTGACGTGCTTTCTGCGGGAAATGCAGTTTCTTCAAGTGATG  162
             |||| |||| ||||| |||||||||||||| |||||||||||| ||||||||||||||||
Sbjct  1060  GATAGAGAGCTCAGACAAGTGACGTGCTTTTTGCGGGAAATGCGGTTTCTTCAAGTGATG  1001

Query  163   AAAGTCGAAATTGATGCTG--G-TGATAACAAGAAACTGCGACTCATCAATCACCTTCTT  219
             |||||||||||||||||||  | |||||||||||||| || |||||| ||||||||||||
Sbjct  1000  AAAGTCGAAATTGATGCTGATGATGATAACAAGAAACAGCAACTCATTAATCACCTTCTT  941

Query  220   GCTCTGCCCAGACGTTCATCTAA  242
             |||||||||| ||||||||||||
Sbjct  940   GCTCTGCCCATACGTTCATCTAA  918


 Score = 69.4 bits (37),  Expect = 1e-11
 Identities = 41/43 (95%), Gaps = 0/43 (0%)
 Strand=Plus/Minus

Query  1     ATGCTTGCACGTCAAGTATTACGTACAATCCTAACTCTGTATG  43
             |||||| | ||||||||||||||||||||||||||||||||||
Sbjct  1208  ATGCTTCCGCGTCAAGTATTACGTACAATCCTAACTCTGTATG  1166


> AT5G25860.1 | Symbols:  | F-box/RNI-like superfamily protein 
| chr5:9016908-9018424 REVERSE LENGTH=1347
Length=1347

 Score =  239 bits (129),  Expect = 1e-62
 Identities = 178/201 (89%), Gaps = 5/201 (2%)
 Strand=Plus/Plus

Query  49    TGCATTGATCGAAATGAAGTGAAGGTGTTGGAGATACATGGGTTTAGTGGACGTGATAAA  108
             ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||| || |
Sbjct  1129  TGCGTTGATCGAAATGAAGTGAAGGTGTTGGAGATATATGGGTTTAGTGGATGTGGTAGA  1188

Query  109   GAGGTCAGAGAAGTGACGTGCTT-TCTGCGGGAAATGCAGTTTCTTCAAGTGATGAAAGT  167
             || || ||| |||||| |||||| | ||||||||||||||||||||||||||||||||||
Sbjct  1189  GAAGTGAGACAAGTGAAGTGCTTGT-TGCGGGAAATGCAGTTTCTTCAAGTGATGAAAGT  1247

Query  168   CGAAATTGATGCTG--G-TGATAACAAGAAACTGCGACTCATCAATCACCTTCTTGCTCT  224
              ||||||||||||   | |||||||||||||||| || |||||||||||||||||| |||
Sbjct  1248  GGAAATTGATGCTCATGATGATAACAAGAAACTGAGAGTCATCAATCACCTTCTTGATCT  1307

Query  225   GCCCAGACGTTCATCTAAATT  245
              || | |||| ||||||||||
Sbjct  1308  TCCTAAACGTCCATCTAAATT  1328



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12064259760


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5