BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901221
Length=657
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33870.1 | Symbols: ArRABA1h | RAB GTPase homolog A1H | chr2... 1064 0.0
AT1G28550.1 | Symbols: AtRABA1i, RABA1i | RAB GTPase homolog A1... 715 0.0
AT5G60860.1 | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog A1... 339 3e-92
AT5G47960.1 | Symbols: SMG1, ATRABA4C, RABA4C | RAB GTPase homo... 91.6 8e-18
AT5G47970.1 | Symbols: | Aldolase-type TIM barrel family prote... 69.4 4e-11
> AT2G33870.1 | Symbols: ArRABA1h | RAB GTPase homolog A1H | chr2:14337366-14338251
REVERSE LENGTH=657
Length=657
Score = 1064 bits (576), Expect = 0.0
Identities = 630/657 (96%), Gaps = 0/657 (0%)
Strand=Plus/Plus
Query 1 ATGGGAACATATAAAGCTGAAGACGATTACGATTACCTCTTCAAGGTTGTCTTAACGGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGAACATATAAAGCTGAAGACGATTACGATTACCTCTTCAAGGTTGTCTTAACGGGA 60
Query 61 GATTCCGGTGTCGGGAAATCAAATCTGCTATCCCGATTCACCAGAAACGATTTTAGCCAC 120
||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 GATTCCGGTGTAGGAAAATCAAATCTGCTATCCCGATTCACCAGAAACGACTTTAGCCAC 120
Query 121 GACTCACGCTCGACCATCGGTGTTGAGTTTGCCACACGTAGCATCCAAGTGGACGACAAG 180
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 121 GACTCACGCTCGACCATCGGTGTTGAATTTGCCACACGTAGCATCCAGGTCGACGACAAG 180
Query 181 ATTGTCAAAGCTCAGATATGGGACACTGCTGGTCAAGAAAGGTATCGAGCCATCACTAGC 240
||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||
Sbjct 181 ATTGTCAAAGCTCAGATATGGGACACTGCCGGCCAAGAAAGGTATCGAGCCATCACGAGC 240
Query 241 GCGTACTATCGAGGAGCCGTTGGTGCGTTACTAGTCTACGACGTGACACGGCACGTGACA 300
|| || || ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 GCTTATTACCGAGGAGCCGTTGGTGCATTACTAGTCTACGACGTGACACGGCACGTGACA 300
Query 301 TTCGAGAACGTTGAGAGATGGCTAAAGGAGCTAAGAGACCACACGGACGCAAACACTGTG 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCGAGAACGTTGAAAGATGGCTAAAGGAGCTAAGAGACCACACGGACGCAAACACTGTG 360
Query 361 ATAATGCTCGTAGGTAACAAAGCTGATTTGAATCACCTTCGAGCCATCTCTACGGAAGAA 420
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATTATGCTCGTAGGTAACAAAGCTGATTTGAATCACCTTCGAGCCATCTCTACGGAAGAA 420
Query 421 GTGAAAGATTTTGCAGAGAGAGAGAACACTTTCTTCATGGAGACTTCAGCACTCGAAGCT 480
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 421 GTGAAAGATTTTGCAGAGAGAGAGAACACTTTCTTTATGGAGACTTCGGCACTCGAAGCT 480
Query 481 ATAAATGTAGAAAACGCTTTCACAGAGGTTCTTACTCAGATTTACAGAGTCGTTAGCAAG 540
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 481 ATAAATGTAGAAAACGCTTTCACAGAGGTTCTTACACAGATTTACAGAGTTGTAAGCAAG 540
Query 541 AAGGCTCTTGATGCTGGAGATGATCCTACCACTGCTTTGCCTAAAGGACAGATGATTAAT 600
|||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||
Sbjct 541 AAGGCTCTTGATGCTGGAGATGATCCAACCACTGCCTTGCCTAAAGGACAAATGATTAAC 600
Query 601 GTAGGAAGCAGAGATGATGTTTCAGCCGTCAAGAAATCGGGTTGCTGCGCGACATAG 657
|| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 GTCGGAAGTAGAGATGATGTTTCAGCCGTCAAGAAATCTGGTTGCTGCGCGACATAG 657
> AT1G28550.1 | Symbols: AtRABA1i, RABA1i | RAB GTPase homolog
A1I | chr1:10036966-10037698 REVERSE LENGTH=657
Length=657
Score = 715 bits (387), Expect = 0.0
Identities = 566/653 (87%), Gaps = 10/653 (2%)
Strand=Plus/Plus
Query 1 ATGGGAACATATAAAGCTGAAGACGATTACGATTACCTCTTCAAGGTTGTCTTAACGGGA 60
|||||| |||||| ||| ||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 1 ATGGGAGCATATAGAGCAGAAGACGATTATGATTACCTCTTCAAGGTGGTCTTAACCGGA 60
Query 61 GATTCCGGTGTCGGGAAATCAAATCTGCTATCCCGATTCACCAGAAACGATTTTAGCCAC 120
|||||||| ||||||||||| ||| || |||| || ||||||||||| ||||| ||||||
Sbjct 61 GATTCCGGCGTCGGGAAATCTAATTTGTTATCTCGTTTCACCAGAAATGATTTCAGCCAC 120
Query 121 GACTCACGCT-CGACCATCGGTGTTGAGTTTGCCACACGTAGCATCCAAGTG-GACGACA 178
|||||||| | | ||||||||||| || || |||||||| ||||||||| || || || |
Sbjct 121 GACTCACG-TGCAACCATCGGTGTCGAATTCGCCACACGAAGCATCCAA-TGCGATGATA 178
Query 179 AGATTGTCAAAGCTCAGATATGGGACACTGCTGGTCAAGAAAGGTATCGAGCCATCACTA 238
|||| ||||| ||||| |||||||| || || || ||||||||||| ||||||||||| |
Sbjct 179 AGATCGTCAAGGCTCAAATATGGGATACCGCCGGCCAAGAAAGGTACCGAGCCATCACGA 238
Query 239 GCGCGTACTATCGAGGAGCCGTTGGTGCGTTACTAGTCTACGACGTGACACGGCACGTGA 298
|||| || || |||||||| |||||||| || || || || |||||||| || |||||||
Sbjct 239 GCGCTTATTACCGAGGAGCTGTTGGTGCATTGCTTGTTTATGACGTGACGCGCCACGTGA 298
Query 299 CATTCGAGAACGTTGAGAGATGGCTAAAGGAGCTAAGAGACCACACGGACGCAAACACTG 358
|||||||||| ||||||||||||||||||||||| || ||||||||||||||||||| ||
Sbjct 299 CATTCGAGAATGTTGAGAGATGGCTAAAGGAGCTTAGGGACCACACGGACGCAAACATTG 358
Query 359 TGATAATGCTCGTAGGTAACAAAGCTGAT-TTGAATCACCTTCGAGCCATCTCTACGGAA 417
|||| |||||||| || |||||||||||| || |||||||||||||||||| || |||
Sbjct 359 TGATCATGCTCGTTGGCAACAAAGCTGATCTT-CGTCACCTTCGAGCCATCTCAACCGAA 417
Query 418 GAAG-TGAAAGATTTTGCAGAGAGAGAGAACA-CTTTCTTCATGGAGACTTCAGCACTCG 475
|||| | |||| |||||||||||| ||||| | |||| |||||||||||||| ||||| |
Sbjct 418 GAAGCT-AAAGCTTTTGCAGAGAGGGAGAATACCTTT-TTCATGGAGACTTCTGCACTTG 475
Query 476 AAGCTATAAATGTAGAAAACGCTTTCACAGAGGTTCTTACTCAGATTTACAGAGTCGTTA 535
||||| | ||||| || || |||||||| || ||||| ||||||||||||||||| ||||
Sbjct 476 AAGCTGTGAATGTTGATAATGCTTTCACTGAAGTTCTCACTCAGATTTACAGAGTTGTTA 535
Query 536 GCAAGAAGGCTCTTGATGCTGGAGATGATCCTACCACTGCTTTGCCTAAAGGACAGATGA 595
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 536 GCAAGAAGGCTCTTGAAGCTGGAGATGATCCAACCACTGCTTTGCCTAAAGGACAGATGA 595
Query 596 TTAATGTAGGAAGCAGAGATGATGTTTCAGCCGTCAAGAAATCGGGTTGCTGC 648
||||||| ||| || |||||||| | |||||||| || ||| | |||||||||
Sbjct 596 TTAATGTTGGAGGCCGAGATGATATCTCAGCCGTTAAAAAACCTGGTTGCTGC 648
> AT5G60860.1 | Symbols: AtRABA1f, RABA1f | RAB GTPase homolog
A1F | chr5:24484622-24485705 FORWARD LENGTH=922
Length=922
Score = 339 bits (183), Expect = 3e-92
Identities = 469/607 (77%), Gaps = 19/607 (3%)
Strand=Plus/Plus
Query 8 CATATAAAGCTGAAGACGATTACGATTACCTCTTCAAGGTTGTCTTAACGGGAGATTCCG 67
|||||| ||| || ||||| ||||||||||||||||| ||||| |||| ||||| ||||
Sbjct 136 CATATAGAGCCGACGACGAGTACGATTACCTCTTCAAAGTTGTGTTAATTGGAGACTCCG 195
Query 68 GTGTCGGGAAATCAAATCTGCTATCCCGATTCAC-CAGAAACGATTTTAGCCACGACTC- 125
| || || ||||| || || || || |||||||| | | ||||| || || | ||| ||
Sbjct 196 GCGTTGGAAAATCCAACCTCCTTTCTCGATTCACGC-GCAACGAGTTCAGTCTCGAATCT 254
Query 126 ACGCTCGACCATCGGTGTTGAGTTTGCCACACGTAGCATCCAAGTGGACGACAAGATTGT 185
| || || |||||||| || || ||||| ||||||||||| || || || ||||| ||
Sbjct 255 A-AATCCACGATCGGTGTAGAATTCGCCACTCGTAGCATCCATGTCGATGATAAGATCGT 313
Query 186 CAAAGCTCAGATATGGGACACTGCTGGTCAAGAAAGGTATCGAGCCATCACTAGCGCGTA 245
|||||||||||| ||||| || ||||| |||||||| |||||||| ||||| || || ||
Sbjct 314 CAAAGCTCAGATTTGGGATACCGCTGGCCAAGAAAGATATCGAGCAATCACAAGTGCATA 373
Query 246 CTATC-GAGGAGCCGTTGGTGCGTTACTAGTCTACGACGTGACACGGCACGTGACATTCG 304
|| | ||||||| || || ||||| || || ||||| || ||| | || ||||| || |
Sbjct 374 TTA-CAGAGGAGCTGTAGGAGCGTTGCTTGTGTACGATGTCACAAGACATGTGACGTTTG 432
Query 305 AGAACGTTGAGAGATGGCTAAAGGAGCTAAGAGACCACACGGACGCAAACACT-GTGATA 363
|||||||||| |||||| |||||||||| |||| || || || || || | | || ||
Sbjct 433 AGAACGTTGAAAGATGGTTAAAGGAGCTTCGAGATCATACAGATGCCAATA-TCGTCATC 491
Query 364 ATGCTCGTAGGTAACAAAGCTGATTTGAATCACCTTCGAGCCATCTCTACGGAAGAAG-T 422
||| |||| || |||||||| ||| | |||||| ||||| | || || ||||| | |
Sbjct 492 ATGTTCGTTGGGAACAAAGCGGATCTCCGTCACCTACGAGCTGTTTCGACTGAAGACGCT 551
Query 423 GAAAGATTTTGCAGAGAGAGAGAACACTTTCTTCATGGAGACTTCAGCACTCGAAGCTAT 482
|| | ||| || ||||||||||||||||||||||||||||| ||||| |||||| | ||
Sbjct 552 -AAGGCTTTCGCTGAGAGAGAGAACACTTTCTTCATGGAGACATCAGCTCTCGAATCGAT 610
Query 483 AAATGTAGAAAACGCTTTCACAGAGGTTCTTACTCAGATTTACAGAGTCGTTAGCAAGAA 542
|| || || || |||||||| || || ||| ||||||||||| | || |||||| |||
Sbjct 611 GAACGTCGAGAATGCTTTCACTGAAGTACTTTCTCAGATTTACCGTGTGGTTAGCCGGAA 670
Query 543 GGCTCTTG-ATGCT-GGAGATGATCCTACCACTGCT-TTGCCTAAAGGACAGATGATTAA 599
|| ||| || | ||||| || || | ||||| || || |||||||||| || ||
Sbjct 671 AGCG-TTGGATA-TAGGAGACGA-CC--CGGCTGCTCTTCCC-AAAGGACAGACCATCAA 724
Query 600 TGTAGGA 606
||| |||
Sbjct 725 TGTCGGA 731
> AT5G47960.1 | Symbols: SMG1, ATRABA4C, RABA4C | RAB GTPase homolog
A4C | chr5:19421384-19422533 REVERSE LENGTH=881
Length=881
Score = 91.6 bits (49), Expect = 8e-18
Identities = 218/297 (73%), Gaps = 22/297 (7%)
Strand=Plus/Plus
Query 185 TCAAAGCTCAGATATGGGACACTGCTGGTCAAGAAAGGTATCGAGCCATCACTAGCGCGT 244
||||||||||||||||||||||||||||||||||| |||||||||| | || || || |
Sbjct 251 TCAAAGCTCAGATATGGGACACTGCTGGTCAAGAACGGTATCGAGCGGTGACGAGTGCAT 310
Query 245 ACTATC-GAGGAGCCGTTGGTGCGTTACTAGTCTACGACGTGACA---CGGCACGTGACA 300
|||| | ||||||| || || || | |||| ||||| | ||| || || || |
Sbjct 311 ACTA-CAGAGGAGCAGTAGGGGCAATGTTAGTTTACGATATAACAAAACGACA-GT--CG 366
Query 301 TTCGAGAACGTTGAGAGATGGCTA-AAGGAGCTAAGAG-ACCACACGGACGCAAACACTG 358
|| || | || | ||||||| || ||| | | |||| || | | ||| ||||| ||
Sbjct 367 TTTGATCATGTAGCGAGATGGTTAGAAGAAT-TGAGAGGAC-ATGCTGACAAAAACATTG 424
Query 359 TGATAATGCTCGTAGGTAACAAAGCTGATTT-GA-ATCACCTTCGAGCCAT-CTCTACGG 415
|||| ||||| |||| |||||| ||||| | | | ||| ||||||| | | | || |
Sbjct 425 TGATTATGCTAATAGGAAACAAAACTGATCTCGGGA-CAC-TTCGAGCTGTAC-CAACCG 481
Query 416 AAGAAG-TGAAAGATTTTGCAGAGAGAGAGAA-CACTTTCTTCATGGAGACTTCAGC 470
| || | | ||||| ||||| | ||||| || | ||| ||||||||||| |||||
Sbjct 482 AGGATGCT-AAAGAATTTGCTCAAAGAGAAAATCTGTTT-TTCATGGAGACATCAGC 536
> AT5G47970.1 | Symbols: | Aldolase-type TIM barrel family protein
| chr5:19422203-19425811 FORWARD LENGTH=2070
Length=2070
Score = 69.4 bits (37), Expect = 4e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Minus
Query 185 TCAAAGCTCAGATATGGGACACTGCTGGTCAAGAAAGGTA 224
||||||||||||||||||||||||||||||||||| ||||
Sbjct 81 TCAAAGCTCAGATATGGGACACTGCTGGTCAAGAACGGTA 42
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31747980904
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5