BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901222
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
AT2G33880.1 | Symbols: WOX9, HB-3, STIP | homeobox-3 | chr2:143... 1808 0.0
> AT2G33880.1 | Symbols: WOX9, HB-3, STIP | homeobox-3 | chr2:14341430-14343778
REVERSE LENGTH=1527
Length=1527
Score = 1808 bits (979), Expect = 0.0
Identities = 1088/1138 (96%), Gaps = 17/1138 (1%)
Strand=Plus/Plus
Query 1 ATGGCTTCTTCGAATAGACACTGGCCAAGCATGTTCAAGTCCAAACCTCATCCCCATCAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 ATGGCTTCTTCGAATAGACACTGGCCAAGCATGTTCAAGTCCAAACCTCATCCCCATCAA 241
Query 61 TGGCAACATGACATCAACTCTCCTCTCTTGCCTTCTGCTTCTCACCGATCTTCTCCCTTC 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 242 TGGCAACATGACATCAACTCTCCTCTCTTGCCTTCTGCTTCTCACCGATCTTCTCCTTTC 301
Query 121 TCTTCAGGATGTGAAGTGGAGAGGAGTCCAGAGCCAAAACCAAGATGGAATCCAAAACCA 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 302 TCTTCAGGATGTGAAGTGGAGAGGAGTCCAGAGCCAAAACCAAGATGGAATCCAAAGCCA 361
Query 181 GAGCAGATTCGGATACTTGAAGCAATCTTTAACTCAGGGATGGTGAATCCCCCTAGAGAG 240
||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||
Sbjct 362 GAGCAGATTCGGATACTTGAAGCAATCTTTAACTCCGGGATGGTGAATCCTCCAAGAGAG 421
Query 241 GAGATCAGGAGGATTAGGGCTCAGCTTCAAGAATACGGCCAAGTCGGTGACGCTAACGTC 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 422 GAGATCAGGAGGATTAGGGCTCAGCTTCAAGAATACGGCCAAGTCGGTGATGCTAACGTC 481
Query 301 TTCTACTGGTTCCAAAACCGTAAGTCCCGTAGCAAACACAAACTCCGCCTCCTCCACAAC 360
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 482 TTCTACTGGTTCCAAAACCGTAAGTCCCGTAGTAAACACAAACTCCGCCTCCTCCACAAC 541
Query 361 CACTCCAAACACTCTCTCCCTCAACCGCAA-C-CA----CAGCCGCAACCTTCGGCTTCC 414
|||||||||||||||||||||||| ||||| | || |||||||||||||||||||||
Sbjct 542 CACTCCAAACACTCTCTCCCTCAAACGCAACCGCAGCCGCAGCCGCAACCTTCGGCTTCC 601
Query 415 TCTTCGTCTTCCTCCTCCTCTTCCTCTTCCAAATCCACCAAACCCCGAAAAAACAAGAAC 474
||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct 602 TCTTCCTCTTCCTCCTCCTCTTCCTCCTCCAAATCCACCAAACCCCGAAAAAGCAAGAAC 661
Query 475 AAGAACAACACTAATCTCTCTTTGGGTGGTAGTCAAATGATGGGGATGTTTCCACCGGAA 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 662 AAGAACAACACTAATCTCTCTTTGGGTGGTAGTCAAATGATGGGGATGTTTCCACCGGAA 721
Query 535 CCGGCGTTTCTCTTTCCGGTTTCCACAGTTGGAGGGTTTGAAGGTATCACCGTCTCATCC 594
|||||||||||||| ||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 722 CCGGCGTTTCTCTTCCCGGTCTCCACTGTCGGAGGGTTTGAAGGTATCACCGTCTCATCC 781
Query 595 CAATTAGGGTTTCTCTCCGGTGATATGATCGAGCAACAAAAACCAGCTCCAACGTGTACC 654
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 782 CAATTAGGGTTTCTCTCCGGTGATATGATTGAGCAACAAAAACCGGCTCCAACGTGTACC 841
Query 655 GGACTCCTGCTGAGTGAGATCATGAACGGTAGTGTGAGTTATGGAACTCATCATCAACAA 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 842 GGACTCCTGCTGAGTGAGATCATGAACGGTAGTGTGAGTTATGGAACTCATCATCAACAA 901
Query 715 CACTTGAGTGAGAAAGAAGTTGAAGAAATGAGGATGAAGATGTTGCAACAGCCACAGCCT 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 902 CACTTGAGTGAGAAAGAAGTTGAAGAAATGAGGATGAAGATGTTGCAACAGCCACAGACT 961
Query 775 CAGATTTGTTACGCTACCACAAATCATCAAATAGCTTCTTACAACAACGACAATAACA-C 833
|||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||| |
Sbjct 962 CAGATTTGTTACGCTACCACTAATCATCAAATAGCTTCTTACAACAACAACAACAACAAC 1021
Query 834 -----CAT---GCTTCATATTCCTCCCACTACTTCTACTACTACCACTATTACTACTTCG 885
||| |||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1022 AATAACATCATGCTTCATATTCCTCCCACTACTTCTACTGCCACCACTATTACTACTTCG 1081
Query 886 CATTCTCTCGCTACTGTCCCATCAACTTCGGACCAGCTTCAAGTTCAAGCGGGTGCGA-G 944
|||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 1082 CATTCTCTCGCTACTGTCCCATCAACTTCGGACCAGCTTCAAGTTCAAGCGGACGC-ACG 1140
Query 945 AATAAGGGTTTTTATCAATGAAATGGAGCTTGAAGTGAGCTCGGGACCGTTCAATGTGAG 1004
|||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1141 AATAAGAGTTTTCATCAATGAAATGGAGCTTGAAGTGAGCTCAGGACCGTTCAATGTGAG 1200
Query 1005 GGATGCATTTGGGGAAGAGGTCGTTCTCATTAATTCCGCGGGTCAGCCCATTGTAACCGA 1064
||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||
Sbjct 1201 GGATGCATTTGGGGAAGAGGTTGTTCTGATTAATTCCGCGGGTCAGCCCATTGTCACCGA 1260
Query 1065 TGAATATGGCGTCGCTCTTCACCCACTTCAACACGGAGCCTCATACTATCTGATCTAG 1122
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1261 TGAATATGGCGTCGCTCTTCACCCTCTTCAACACGGAGCCTCGTACTATCTGATCTAG 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55019797320
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5