BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901243
Length=2409
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34150.2 | Symbols: WAVE1 | SCAR family protein | chr2:14419... 3075 0.0
> AT2G34150.2 | Symbols: WAVE1 | SCAR family protein | chr2:14419295-14423467
REVERSE LENGTH=2811
Length=2811
Score = 3075 bits (1665), Expect = 0.0
Identities = 1994/2151 (93%), Gaps = 30/2151 (1%)
Strand=Plus/Plus
Query 277 TGGCATCCTCGTATACCAAATGTGGAAAATCACTTTATATACGACGACCTGCCACCGTTT 336
|||||||||||||||||||||||| ||||||||||||| || ||||| |||||||||||
Sbjct 536 TGGCATCCTCGTATACCAAATGTGCAAAATCACTTTATGTATGACGAATTGCCACCGTTT 595
Query 337 AGTATGGCTCCATATGACGATTGCCGGGAACCTCCGCGGTTGCACTTGCTCGACAAATTT 396
| |||| |||||||||| ||||||||||||||||||||||| |||||||| |||||||||
Sbjct 596 ATTATGACTCCATATGAAGATTGCCGGGAACCTCCGCGGTTACACTTGCTTGACAAATTT 655
Query 397 GATATAAATGGTCCAGGGTCTTGTTTGAAGCGATACTCCGATCCTACTCATTTC-----A 451
||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |
Sbjct 656 GATATAAATGGTCCAGGTTCTTGTTTGAAACGATACTCGGATCCTACTCATTTCAAAAGA 715
Query 452 --A--AAGAGCTTCTAAA-CTTCCAGAAATTAAGAAGAAAAAATCTATACAACGCGGTCG 506
| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||
Sbjct 716 GCATCAAGAGCTTCTAAACCTT-CAGAGATTAAGAAGAAAAAATCTATACAACGCGGTCG 774
Query 507 AGATATATCAAGTCTTGCCTCTGTGGCTAACCAGAGTGACAGGAAGACATTTACTTCTTT 566
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 775 AGATATATCAAGACTTGCCTCTGTGGCTAACCAGAGTGACAGGAAGACATGTACTTCTTT 834
Query 567 AAGCTTCAGTGGACGAACGTCTACTTCTAAAACTGCTTCAACGATTGAAATTGAGTCGAA 626
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 835 AAGCTTCAGTGGACGAACCTCTACCTCTAAAACTGCTTCAACGATTGAAATTGAGTCGAA 894
Query 627 ATCCGACTTGCAAGATCATCGTTCGTTT-TCTTTTGATTCCAGAAGTGGTGGAGAGAAAC 685
||||||||||||||| |||||||| ||| ||||| ||||| |||||||||||||||||||
Sbjct 895 ATCCGACTTGCAAGAGCATCGTTC-TTTCTCTTTCGATTCAAGAAGTGGTGGAGAGAAAC 953
Query 686 CGAAGGGGGTATCTTCTTCTTCAAGGTTTCCACCGGGTTCTCGGACAATTGCTTCGGTTC 745
||||| ||||||||||||||||||||||| ||||||||||||| || |||||||| ||||
Sbjct 954 CGAAGAGGGTATCTTCTTCTTCAAGGTTTACACCGGGTTCTCGCACCATTGCTTCAGTTC 1013
Query 746 TTTCTGACAGTGAAAGCGAAGATACAAATGATAGTCCTTCTCAAGATCTAACAGCTCGTG 805
||||||| ||||||| | | | || ||||||||||||||||||| ||||||||||||
Sbjct 1014 TTTCTGAAAGTGAAA--G-TG--A-AAGTGATAGTCCTTCTCAAGATTTAACAGCTCGTG 1067
Query 806 GTTCGTCTTGCGTTAGTTGGCACGAGAAAGCTGAGATAGTGGAATGCAATGTTCTGCAAT 865
|||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1068 GTTCTTCTAGTGTTAGTTGGCACGAGAAAGCTGAGATAGTGGAATGCAATGTTCTGCAGT 1127
Query 866 GTGCAACAGATGAAAATCCTGAAGCAATGGAAACTAACTTTGTCGTGGATGGC-GAACCA 924
|||||||||||||| |||||||| ||||||||||||||||||| ||||| || |||||
Sbjct 1128 GTGCAACAGATGAAGCTCCTGAAGTAATGGAAACTAACTTTGTCTTGGAT-GCTGAACCG 1186
Query 925 GTATCAAGA-TTGAAAGAACATACAGCGGTTGAAGCGGTCCAAGATATCGAACCGAAGGA 983
||||||||| || ||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1187 GTATCAAGACTT-AAAGAACATTCAGCGGTTGAAGCGGTCCAAGATATCAAACCGAAGGA 1245
Query 984 ATTGGAAATGGACAGTGAGGATGAAACTGAAAGCGAAGGGGACGATTTTGTTGATGCTCT 1043
| |||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1246 ACTGGAAATGGACAATGAGGATGAGACTGAAAGCGAAGGGGATGATTTTGTTGATGCACT 1305
Query 1044 TTACACCATCGACTCGGAATCTGAAAATGATCAAGTTTTCCAAACCACTAAAGAGGTGCA 1103
|||||||||||| || ||||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 1306 TTACACCATCGATTCAGAATCTGAAAATGATGAAGCTTTCCAAGCCACTAAAGAGGTGCA 1365
Query 1104 GAAGAATCTTTCCAATGAGATTACAGAGCAAGAAACAGAGAAGATTTCTAACAACTTTAG 1163
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 GAAGAATCTTTACAATGATATTACAGAGCAAGAAACAGAGAAGATTTCTAACAACTTTAG 1425
Query 1164 TGTTGATGAGACAATATGTGCTGCTACATCAGAGCTACA-TT-T-ATCATCACCAGTAAA 1220
|||||||||||||| |||||||||||||||||||||||| || | ||||||||| ||| |
Sbjct 1426 TGTTGATGAGACAAAATGTGCTGCTACATCAGAGCTACATTTATCATCATCACCGGTATA 1485
Query 1221 TAAATCTAATGAACTGATTCATCAAGATCCATGGGCGGCTTCAGAAATAAGCAGTGGCAC 1280
||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1486 TAAATCTGATGAACTGATTCATCAAGATCCATGGGCGGCTTCGGAAATAAGTAGTGGCAC 1545
Query 1281 TCATAGTTATTCTAATGGCTTCTCAAATCCCTTGTATGATATTAGCGGTATTCAAGAACA 1340
|||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct 1546 TCATAGTTATTCCAATGGCTTCTCAAATCCTTTGTATGATATTAGTGGTATCCAAGAACA 1605
Query 1341 TCAAGAATCAGAAGAAGTTAAGACTTCTTGTGACACAGAATCCATTAAAACATGGACTAA 1400
||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||
Sbjct 1606 TCAAGAATCAGAAGAAGTTGAGAGTTCTTGTGACACTGAATCCATTAAAACATGGACTAA 1665
Query 1401 TGGAAATCTGCTGGGACTGAAACCATCGAAACCGAAGATTATATCAGCAACTATTCCAGA 1460
||||||||| || ||||||||||||||||||||||| |||||| ||| ||||||||||||
Sbjct 1666 TGGAAATCTCCTAGGACTGAAACCATCGAAACCGAAAATTATAGCAGAAACTATTCCAGA 1725
Query 1461 GATTGTTGAAAACATTGATTCTGAAACCTTCCAAGAGCCCTTGAGAGAAGATTATAAGGC 1520
|||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 1726 GATTGTTGAAGACATTGATTCTGAAACCTTCCAAGAGCACTTAAGAGAAGATTATAAGGC 1785
Query 1521 TCCTTTTGATTGGTTTACTTCATCTCCTCCACTTGATCACATGAAAATATCATTCAAATC 1580
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1786 TCCTTTTGATTGGTTTACTTCATCTCCTCCACTTGATCACATGAAAATATCTTTCAAATC 1845
Query 1581 CGCAGAAACCTTGCCGAGCTCCAAACTAGAGCTGAAATTTCCAGATGAATATACATTTTC 1640
| ||||||||||||| || || ||||| |||| ||| ||||||||||||||||||||||
Sbjct 1846 CTCAGAAACCTTGCCAAGTTCTGAACTACAGCTAAAACTTCCAGATGAATATACATTTTC 1905
Query 1641 TTCCTTTCAGTTGGTGCCAGAGACTATTGCTACATCACTTCCTGATTCTGATTCAGACAA 1700
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1906 TTCGTTTCAGTTGGTGCCAGAGACTATTGCTACTTCACTTCCTGATTCTGATTCAGACAA 1965
Query 1701 GGATACTTTCTGTAGATCCTCTTCTTACATTTCAGATAACAGCGACAATGACAATCGCTC 1760
||| |||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1966 GGACACTTTCTGTAGATCTTCTTCTTACATTTCAGACAACAGTGACAATGACAATCGCTC 2025
Query 1761 TCTGTCAATGTCTGAGCAGCAGTGGGAAGAAGAATCAGACGGTATCCGAGAAAGCAAGAG 1820
| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 2026 TGTGTCAATGTCTGAGCAACAGTGGGAAGAAGAATCAGAAGGTATCCGAGAAAGCAAGAG 2085
Query 1821 CCAACAAGAGCTCTATGATTCTTTTCACAGAATTTCTGCAGAAGCTTCTTCTCTATCAGC 1880
|||||||||||||||||||| ||||||||| | ||| ||||||||||||||| |||
Sbjct 2086 GCAACAAGAGCTCTATGATTCGTTTCACAGAGTCAATGCTGAAGCTTCTTCTCTACCAGT 2145
Query 1881 TCCATTTCCAAAGATTGAAACATCAAATGGTTATTTAGCTGGAAATGTCTCTTACCTCCA 1940
|||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||||||
Sbjct 2146 TCCATTTCCAAAGATTGAAACAACAAATGGTTGTTTAGTTGAAAATGTCTCTTACCTCCA 2205
Query 1941 AAATCCAGCTGAGCCGTTGCCACCGCCTCTCCCACCGTTACAGTGGATGGTATC-AAAGA 1999
||||||||||||||| || |||||||||||||||||||||||||||||||| || ||| |
Sbjct 2206 AAATCCAGCTGAGCCATTACCACCGCCTCTCCCACCGTTACAGTGGATGGTTTCGAAA-A 2264
Query 2000 TACCGTCAGG-GAGATTCGAGGATAACAACAAGCAGTCTCTAAAGGATGCTCTCATACAG 2058
||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2265 TACCGTCAGCTG-GATTCGAGGATAACAACAAGCAGTCTCTAAAGGATGCTCTCACACAG 2323
Query 2059 GCATTTGAGAAGAACAACAATTCTTTAACTGCAGTCAAGAAAGAAGAACCAAACATTGTC 2118
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2324 GCATTTGAGAAGAACAACAATTCTTTAACTGCAGTCAAGAAAAAAGAACCACACATTGTC 2383
Query 2119 ACTGTTTCTGATCCTAAACTGGAAAACAAGGTACATTTGAAGAACAATGTGAGGGATTAT 2178
|||||||||||||||||||| | || |||||||||| |||||||||||||||||||||||
Sbjct 2384 ACTGTTTCTGATCCTAAACTTGTAACCAAGGTACATCTGAAGAACAATGTGAGGGATTAT 2443
Query 2179 AAGCAAAGTCAAGGCAACAAAAAAGAGACAGATGCTGGTGACTTCTTGCATCAAATCCGA 2238
||||||||||| ||||||| ||| |||||||| ||||| ||||||||||||||||| |||
Sbjct 2444 AAGCAAAGTCATGGCAACACAAATGAGACAGAAGCTGGAGACTTCTTGCATCAAATTCGA 2503
Query 2239 ACAAAACAATTCAACTTGAGACGTGTGGTCACGACAAAGACATCATCATCAGAAGCTACA 2298
|| |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 2504 ACTAAACAATTCAACTTGAGACGTGTGGTCAGGACAAAGACATCATCATCAGAAACTACA 2563
Query 2299 ATGAACACCAATTTTAGCGTGATTCTAGAGAAGGCAAACTCTATCCGACAGGCTGTAGCA 2358
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2564 ATGAACACCAATATTAGCGTGATTCTAGAGAAGGCAAACTCTATCCGACAGGCTGTAGCA 2623
Query 2359 AGCGACGATGGAGATGGCGAAAGCGATACATGGAGCGATAGCGACACATGA 2409
|||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2624 AGCGACGATGGAGAAGGCGAAAGCGATACATGGAGCGATAGCGACACATGA 2674
Score = 427 bits (231), Expect = 2e-118
Identities = 261/276 (95%), Gaps = 0/276 (0%)
Strand=Plus/Plus
Query 1 ATGCCGCTTGTTAGGCTCCAAGTTAGGAACGTCTACGGTTTAGGGCAACCGGAGCTTCAC 60
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 209 ATGCCGCTTGTTAGGCTCCAAGTTAGGAATGTCTACGGTTTAGGGCAAAAAGAGCTTCAC 268
Query 61 ACCAAAGTCGATCGTGAAGACCCTAAAGCGATTCTCGACGGCGTCGCCGTTTCTGGACTC 120
|| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 269 ACAAAAGTCGACCGTGAAGACCCTAAAGCGATTCTCGACGACGTCGCCGTTTCTGGACTC 328
Query 121 ATTGGGATCTTGCGTCAACTCGGTGATCTGACCGAGTTTGCAGCAGAGATATTCCATGGA 180
| |||||||||||||||||||||||||| || || || |||||||||||||||||||||
Sbjct 329 GTCGGGATCTTGCGTCAACTCGGTGATCTCACAGAATTCGCAGCAGAGATATTCCATGGA 388
Query 181 ATACAAGAGGAGGTAATGATAACAGCATCAAGAAGCAATAAATTGAAGATGAGACTGAAG 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 389 ATACAAGAGGAGGTAATGATAACAGCATCAAGAAGCAACAAATTGAAGATGAGATTGAAG 448
Query 241 CAAATAGAAGCTAAAGTTCCTACAATCCAAAAGACA 276
||||||||||||||||||||||||||||||||||||
Sbjct 449 CAAATAGAAGCTAAAGTTCCTACAATCCAAAAGACA 484
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119627898735
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5