BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901256
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34280.1 | Symbols: | F-box and associated interaction doma... 704 0.0
AT4G01640.1 | Symbols: | F-box associated ubiquitination effec... 381 7e-105
AT5G10340.1 | Symbols: | F-box family protein | chr5:3253122-3... 233 2e-60
> AT2G34280.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:14470201-14471837 REVERSE LENGTH=1637
Length=1637
Score = 704 bits (381), Expect = 0.0
Identities = 498/551 (90%), Gaps = 21/551 (4%)
Strand=Plus/Plus
Query 1 ATGGACTTGCTACCCTACGATGTTGTGGAGCATATTCTGGAGAGACTTGATGTGAAAACC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 328 ATGGACTTGCTACCCTACGATGTTGTGGAGCATATTCTGGAGAGACTTGATGTGAAATCC 387
Query 61 TTGCTCAAGTTCAAGTTCGTATCGAAGCAATGGAAATCTACAATCCAATGCCGTGCTTTC 120
|||||||| | ||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 388 TTGCTCAACTGCAAGTCCGTATCGAAGCAATGGAGATCTACAATCCGATGCCGTGCTTTC 447
Query 121 CAAGAAAGACAACTGATGCATCGTAGGCAATCAGGTAATCCAGATGTCCTTTTGGTATCC 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 448 CAAGAAAGACAACTGATGCATCGTAGGCAATCATGTAATCCAGATGTCCTTTTGGTATCC 507
Query 181 GTATG-TGATGAATCTTATCTTATTGGTACAGAGCTTGAAGCTATGAGAACGTTGGTAGT 239
||| | |||||||| ||||||| || | || || | ||| |||||||||||||||| |
Sbjct 508 GTA-GCTGATGAATTTTATCTTCTTAAAAGAGTGCATCAAGTTATGAGAACGTTGGTACT 566
Query 240 GGGGTCATCAGTTTCGGTTAGGATCCTTACTCCTTGGGAAAAAACCTTGTACAAAGTTTG 299
||| ||||||||||| |||||||||||||||||||||||| | || ||||||||||||||
Sbjct 567 GGGTTCATCAGTTTCTGTTAGGATCCTTACTCCTTGGGAAGACACATTGTACAAAGTTTG 626
Query 300 CCAGAGTAGCTGTGACGGCCTGATATGCCTCTACAATGAC-TATCCTAAGAATATTGTTG 358
||||||||||||||||||||||||||||||||||||| || ||| || |||||||||||
Sbjct 627 CCAGAGTAGCTGTGACGGCCTGATATGCCTCTACAAT-ACCTATGCTTCGAATATTGTTG 685
Query 359 TTAATCCCACCACTCGATGGCATCGA-ACTTTCCCTCGTTCTACCTATCAACGACTC-A- 415
|||||||||||||||||||||||||| | || ||||| |||||||| |||||||||| |
Sbjct 686 TTAATCCCACCACTCGATGGCATCGAGAATT-CCCTCTTTCTACCTTTCAACGACTCGAT 744
Query 416 C-T-A-GT-CA-----T-GG---AGAATCATGGGCTAAGCTTGGATTCGGTAAAGACAAA 462
| | | | || | || || ||||||||||||||||||||||||||||||||||
Sbjct 745 CGTTATGAACACCAGGTCGGTTCAGTATCATGGGCTAAGCTTGGATTCGGTAAAGACAAA 804
Query 463 ATCAATGGCACATACAAGCCAGTTTGGTTATACAATTCTGCTGAATTAGGCGGCCTTAAC 522
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 805 ATCAATGGCACATACAAGCCAGTTTGGTTATATAATTCTGCTGAATTAGGCGGCCTTAAC 864
Query 523 GATGACGACGA 533
|||||||||||
Sbjct 865 GATGACGACGA 875
Score = 399 bits (216), Expect = 2e-110
Identities = 240/252 (95%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 534 CAACAACAACACTAGTACTATTTGTGAAGTTTTTGATTTTACCTCCAAGGCTTGGAGGTA 593
||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 924 CAACAACAACACTAGTACTTTTTGTGAAGTTTTTGATTTTACCACCAAGGCTTGGAGGTT 983
Query 594 TGTTGTCCCCGCGTCCCCCTACCCGATACTTCCTTACCAAGATCCTGTATATGTAGATGG 653
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 984 TGTTGTCCCGGCGTCCCCCTACCGGATACTTCCTTACCAAGATCCTGTATATGTAGATGG 1043
Query 654 GTCACTTCATTGGCTCACTGCGGGTGAAACCACCAATGTTTTGTCTTTTGATCTTCATAC 713
|||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
Sbjct 1044 GTCACTTCATTGGCTCACTGAGGGTGAAACCACCAATGTTTTGTCTTTCGATCTTCATGC 1103
Query 714 CGAAACTTTCCAAGTCATGTCTAAAGCTCCCTTTCTCCACCACCACGACCACTCTAATAG 773
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 1104 CGAAACTTTCCAAGTCGTGTCTAAAGCTCCCTTTCTCCACCACCACGACTACTCTAGTAG 1163
Query 774 AGAGTTGGTCAT 785
||||||| ||||
Sbjct 1164 AGAGTTGATCAT 1175
Score = 370 bits (200), Expect = 2e-101
Identities = 272/305 (89%), Gaps = 11/305 (4%)
Strand=Plus/Plus
Query 782 TCATaaaaaa-aTGGCCCAACCAAGTGATATGGTCGTTGGATTCAGACCACAAGACATGG 840
||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1204 TCAGAAAAAATGTGGCCCAACCAAGTGATATGGTCGTTGGATTCAGATCACAAGACATGG 1263
Query 841 AAGGAAATATATTCCATAGATCTCAATATAACTTCTT-TTTGGTTTGGGAAGCA-TAGAT 898
||||||||||||||||||||||||||||||||||||| |||| ||||||| | | | |||
Sbjct 1264 AAGGAAATATATTCCATAGATCTCAATATAACTTCTTCTTTG-TTTGGGA-GTAATGGAT 1321
Query 899 TCGCACTCACG-CCACTAGCAGTTGTGGACAAAGACAAGTTATTGTTTTGTGAACCT-AA 956
||||||||| | ||||||| |||| | |||||||||||||| ||||||||||||||| ||
Sbjct 1322 TCGCACTCA-GACCACTAGGAGTTTTTGACAAAGACAAGTTGTTGTTTTGTGAACCTGAA 1380
Query 957 CTCCGGAGATCAATTGGTAACACATGATCCCAAAACCAAATCTTATGAATTAGCTTACAT 1016
| ||| ||||||||| ||||||||||||||||||| |||||||||||||| | |||||
Sbjct 1381 -TACGGGGATCAATTGCTAACACATGATCCCAAAACAAAATCTTATGAATTTGATTACAG 1439
Query 1017 ATCTTTTTATCGTACTACTGCA-TACCCTCTTTGTTATTTCCAGAGTTTACTGTCTATTT 1075
|| ||||| | |||||||||| | ||||||||||||||||||||||||| | |||||||
Sbjct 1440 ATTTTTTTCCCCTACTACTGCACT-CCCTCTTTGTTATTTCCAGAGTTTAATCTCTATTT 1498
Query 1076 TGTAA 1080
|||||
Sbjct 1499 TGTAA 1503
> AT4G01640.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr4:702563-703600 FORWARD LENGTH=903
Length=903
Score = 381 bits (206), Expect = 7e-105
Identities = 274/305 (90%), Gaps = 11/305 (4%)
Strand=Plus/Plus
Query 782 TCATaaaaaa-aTGGCCCAACCAAGTGATATGGTCGTTGGATTCAGACCACAAGACATGG 840
||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 604 TCAGAAAAAATGTGGCCCAACCAAGTGATATGGTCGTTGGATTCAGATCACAAGACATGG 663
Query 841 AAGGAAATATATTCCATAGATCTCAATATAACTTCTT-TTTGGTTTGGGAAGCA-TAGAT 898
||||||||||||||||||||||||||||||||||||| |||| ||||||| | | | |||
Sbjct 664 AAGGAAATATATTCCATAGATCTCAATATAACTTCTTCTTTG-TTTGGGA-GTAATGGAT 721
Query 899 TCGCACTCACG-CCACTAGCAGTTGTGGACAAAGACAAGTTATTGTTTTGTGAACCT-AA 956
||||||||| | |||||||||||| | |||||||||||||||||||||||||||||| ||
Sbjct 722 TCGCACTCA-GACCACTAGCAGTTTTTGACAAAGACAAGTTATTGTTTTGTGAACCTGAA 780
Query 957 CTCCGGAGATCAATTGGTAACACATGATCCCAAAACCAAATCTTATGAATTAGCTTACAT 1016
| ||| ||||||||| ||||||||||||||||||| |||||||||||||| | |||||
Sbjct 781 -TACGGGGATCAATTGCTAACACATGATCCCAAAACAAAATCTTATGAATTTGATTACAG 839
Query 1017 ATCTTTTTATCGTACTACTGCA-TACCCTCTTTGTTATTTCCAGAGTTTACTGTCTATTT 1075
|| ||||| | |||||||||| | ||||||||||||||||||||||||| | |||||||
Sbjct 840 ATTTTTTTCCCCTACTACTGCACT-CCCTCTTTGTTATTTCCAGAGTTTAATCTCTATTT 898
Query 1076 TGTAA 1080
|||||
Sbjct 899 TGTAA 903
Score = 327 bits (177), Expect = 1e-88
Identities = 229/252 (91%), Gaps = 12/252 (5%)
Strand=Plus/Plus
Query 534 CAACAACAACACTAGTACTATTTGTGAAGTTTTTGATTTTACCTCCAAGGCTTGGAGGTA 593
||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||
Sbjct 336 CAACAACAACACTAGTACTTTTTGTCAAGTTTTTGATTTTACCACCAAGGCTTGGAGGTT 395
Query 594 TGTTGTCCCCGCGTCCCCCTACCCGATACTTCCTTACCAAGATCCTGTATATGTAGATGG 653
||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 396 TGTTGTCCCGGCGTCCCCCTACCGGATACTTCCTTACCAAGATCCTGTATATGTAGATGG 455
Query 654 GTCACTTCATTGGCTCACTGCGGGTGAAACCACCAATGTTTTGTCTTTTGATCTTCATAC 713
|||||||||||||||||| | | ||| | |||||||||||| |||||||||||
Sbjct 456 GTCACTTCATTGGCTCAC--C-----A--CCA--A-TGTTTTGTCTTTCGATCTTCATAC 503
Query 714 CGAAACTTTCCAAGTCATGTCTAAAGCTCCCTTTCTCCACCACCACGACCACTCTAATAG 773
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 504 CGAAACTTTCCAAGTCGTGTCTAAAGCTCCCTTTCTCCACCACCACGACTACTCTAGTAG 563
Query 774 AGAGTTGGTCAT 785
||||||| ||||
Sbjct 564 AGAGTTGATCAT 575
Score = 281 bits (152), Expect = 8e-75
Identities = 237/274 (86%), Gaps = 22/274 (8%)
Strand=Plus/Plus
Query 309 CTGTGACGGCCTGATATGCCTCTACAATGA-CTATCCTAAGAATATTGTTGTTAATCCCA 367
|||||||||||||||||||||||||||| | |||| || ||||||||||||||||||||
Sbjct 63 CTGTGACGGCCTGATATGCCTCTACAAT-ACCTATGCTTGGAATATTGTTGTTAATCCCA 121
Query 368 CCACTCGATGGCATCGA-ACTTTCCCTCGTTCTACCTATCAACGACTC-A-C--TA-G-- 419
||||||||||||||||| | ||||||| |||||||| |||||||||| | | || |
Sbjct 122 CCACTCGATGGCATCGAGA-ATTCCCTCTTTCTACCTTTCAACGACTCGATCGTTATGAA 180
Query 420 --TCA--T-GG---AGAATCATGGGCTAAGCTTGGATTCGGTAAAGACAAAATCAATGGC 471
|| | || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CACCAGGTCGGTTCAGTATCATGGGCTAAGCTTGGATTCGGTAAAGACAAAATCAATGGC 240
Query 472 ACATACAAGCCAGTTTGGTTATACAATTCTGCTGAATTAGGCGGCCTTAACGATGACGAC 531
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 241 ACATACAAGCCAGTTTGGTTATATAATTCTGCTGAATTAGGCGGCCTTAACGATGACGAC 300
Query 532 GACAACAACAAC-AC-T-AGTACTATTTGTGAAG 562
|| || || || || | |||| ||||||| |||
Sbjct 301 GAGGACTACGACGACATTAGTATTATTTGTCAAG 334
Score = 60.2 bits (32), Expect = 4e-08
Identities = 32/32 (100%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 111 CCGTGCTTTCCAAGAAAGACAACTGATGCATC 142
||||||||||||||||||||||||||||||||
Sbjct 31 CCGTGCTTTCCAAGAAAGACAACTGATGCATC 62
> AT5G10340.1 | Symbols: | F-box family protein | chr5:3253122-3255045
FORWARD LENGTH=1338
Length=1338
Score = 233 bits (126), Expect = 2e-60
Identities = 586/790 (74%), Gaps = 104/790 (13%)
Strand=Plus/Plus
Query 31 CATATTCTGGAGAGACTTGATGTGAAAACCTTGCTCAAGTTCAAGTTC-GTATCGAAGCA 89
||||| ||| ||| ||||||||||||||| | |||||||||||| || |||||||||||
Sbjct 229 CATATAATGGTGAGGCTTGATGTGAAAACCCTCCTCAAGTTCAAG-TCTGTATCGAAGCA 287
Query 90 ATGGAAATCTACAATCCAATGCCGT-GCTTTCCAAGAAAGACAACTGAT---GCATCGTA 145
||||| ||||||||||||| || | | ||||||||||||||| |||| |||| ||
Sbjct 288 ATGGATGTCTACAATCCAATCCCCTAG-TTTCCAAGAAAGACAGTTGATCCACCATCTTA 346
Query 146 GGC-A--ATCAGGTA-ATCCAGATGTCCTTTTGGTATCCGTATGTGA----TG-AATC-T 195
| | | |||||| | ||||| |||| |||||||| ||| ||| ||| || || |
Sbjct 347 GCCAATCATCAGG-AGATCCACATGTGCTTTTGGTGTCCTTATATGATCCTTGTGCTCGT 405
Query 196 TATC-TTAT---TG-GTACAG-AGC-TTGAAGCTATGAGAACGTTGGTAGTGGGGTCA-- 246
| | || | || || ||| |||||||| ||||||| || | |||| ||||
Sbjct 406 CAACAAGATCCAAGCATA-AGCAGCTTTGAAGCTCTGAGAACTTTTTTGGTGGAGTCATC 464
Query 247 T-CAGTTTCGGTT-AGGATCCTTACTCCTTGGGA-AAAAACCTTGTACAAAGTTTGCCAG 303
| ||| ||| ||| | ||||| |||||||||||| | || |||||| |||||| |
Sbjct 465 TGCAGCTTCTGTTCA-GATCCCTACTCCTTGGGAGGACAA-GTTGTACTTCGTTTGCAAT 522
Query 304 AGTAGCTGTGACGGCCTGATATGCCTCTACAATGACTAT--CCT-AAGAATATTGTTGTT 360
| ||||||||| || ||||||||||||| | | |||| || || |||||| ||
Sbjct 523 ACTAGCTGTGATGGTCTGATATGCCTCTTTAGTTTCTATGAACTGCCGAGTATTGTCGTC 582
Query 361 AATCCCACCACTCGATGGCATCGAACTTTCCCTCGTT-CTACCTATCAACGACTCACTA- 418
||||||||||||||||||||||||||||||||| | | || ||||||| | || ||
Sbjct 583 AATCCCACCACTCGATGGCATCGAACTTTCCCTAAATGCAAC-TATCAACTAGTCGCTGC 641
Query 419 -GTCATGG---AGA-ATCATG-G-GCT--AA-G-C---T----T------GGATTCGGTA 454
| || || ||| | || | | ||| || | | | | ||||| || |
Sbjct 642 CGACAAGGGTGAGAGA-CACGAGTGCTTTAAAGTCGCATGCCCTACTCCTGGATTTGGCA 700
Query 455 AAGACAAAATCAATGGCACATACAAGCCAGTTTGGTTATACAATTCTGCTGAATTAGGCG 514
|||||||||||| |||||| |||||||||||||||||||| ||||| ||||| |||| |
Sbjct 701 AAGACAAAATCAGTGGCACTTACAAGCCAGTTTGGTTATATAATTCCGCTGAGTTAGAC- 759
Query 515 GCCTTAACGATGACGACGACAACAACAACACTAGTACTATTTGTGAAGTTTTTGATTTTA 574
| | || ||||| | | | | || || || | |||||||||| ||||||
Sbjct 760 -C-T-AA--ATGACAA-G-C--CTAC-----TA---CT-T--GTGAAGTTTTCGATTTTG 799
Query 575 CCTCCAAGGCTTGGAGGTATGTTGTCCCCGCGTCCCC-CTACCCGATACTTC-CTTACC- 631
|| |||| ||||||||||| ||| ||||||||||||| | | | ||| |||| | |||
Sbjct 800 CCACCAACGCTTGGAGGTACGTTTTCCCCGCGTCCCCTC-ATCTGATTCTTCAC--ACCC 856
Query 632 AAGATCCTGTATATGTAGATGGGTCACTTCATTGGCTCACTGCGG-GTGAAAC-----C- 684
|||||||||| |||||||| ||||||||||| ||| ||||||| || | || |
Sbjct 857 AAGATCCTGTTTATGTAGACGGGTCACTTCACTGGTTCACTGCCTTGTCACACGAGGGCG 916
Query 685 A--CCAATG-TTTTGTCTTTTGATCTTCA-TACCGAAACTTTCCAAGTCATGTCTAAAGC 740
| ||| || |||||||||| |||||||| | ||||||| ||||||||||| ||||||||
Sbjct 917 AAACCA-TGGTTTTGTCTTTGGATCTTCACT-CCGAAACGTTCCAAGTCATCTCTAAAGC 974
Query 741 TCCCTTTCTC 750
||||||||||
Sbjct 975 TCCCTTTCTC 984
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5