BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901259
Length=624
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34315.1 | Symbols: | Avirulence induced gene (AIG1) family... 588 2e-167
> AT2G34315.1 | Symbols: | Avirulence induced gene (AIG1) family
protein | chr2:14480219-14483056 REVERSE LENGTH=776
Length=776
Score = 588 bits (318), Expect = 2e-167
Identities = 448/506 (89%), Gaps = 28/506 (6%)
Strand=Plus/Plus
Query 142 AATATGGCTGCTCGGGAATTG---CCCTCCGTTAC-AGATATAGTTCTAGTAGGGCG--- 194
|||||||||| || |||| || ||||||||||| || |||||||||||||||||
Sbjct 241 AATATGGCTGATCAGGAACTGCCACCCTCCGTTACAAG-CATAGTTCTAGTAGGGCGTAA 299
Query 195 TAATGGCAATGGAAAGAGCTTCACCGGAAACACCCTCCTTGGTGAAAAACTCGACATATC 254
||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||
Sbjct 300 TAATGGCAATGGAAAAAGCTTCACTGGAAACACCCTCCTCGGTGAAAAACTCTTCATATC 359
Query 255 AAAAGCAGATGCAGGAGGTGTTACCATGGAAGAAAATGATAAGCTCAAGGaaaaaaaaaG 314
||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct 360 CAAAGCAGATGCAGGAGGTGTTACCATGGAAGAAGACGATAAGCTCAAGGAAAAAGAAAG 419
Query 315 GGAAATCGAATCTAAGAGCCTTTCGGAAGCAGAGGTAATAGCGATGAAAGAGCA-GTCAC 373
||| |||||||||||||||||| |||||||||||||||| || ||||||||| | |||||
Sbjct 420 GGAGATCGAATCTAAGAGCCTTGCGGAAGCAGAGGTAATTGCAATGAAAGAG-AGGTCAC 478
Query 374 GGATGGAGCATGAGCATACTATGAATATGATGGCACAC---GAAGTGGAGCATGCGCTAA 430
||| ||||||||| ||||||||| | || ||||||||| |||||||||||||||||||
Sbjct 479 GGAAGGAGCATGACCATACTATG-A-AT-ATGGCACACGAAGAAGTGGAGCATGCGCTAA 535
Query 431 AACAAAATGCGGAAACACATGAAGAAGAGACGCAGCATCATGTGATTGATGTCTCCGA-A 489
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 536 AACAAAATACGGAAACACATGAAAAAGAGACGCAGCATCATGTGATTGATGTCTCCGACA 595
Query 490 GTACT----A--A--T--TA-TAAAAGATCGGCCACATAGGTTTGGTGTGATTGTTGCAC 538
||||| | | | || |||||||||| |||||||||||||||||||||||| |||
Sbjct 596 GTACTGCCGATGAAGTAGTAATAAAAGATCGACCACATAGGTTTGGTGTGATTGTTTCAC 655
Query 539 AACTTTCAAATCATCATCTACTACtgttttgtatgttctattgtttttgtttcttctact 598
|||||| ||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||
Sbjct 656 AACTTTTAAATCATCATCTACTACTGTTTTGTGTGTTTTATTGCTTTTGCTTCTTCTACT 715
Query 599 tttgcattttcccaactcttttgtAA 624
||||||||||||||||||| |||||
Sbjct 716 TTTGCATTTTCCCAACTCTACTGTAA 741
Score = 174 bits (94), Expect = 8e-43
Identities = 118/129 (91%), Gaps = 4/129 (3%)
Strand=Plus/Plus
Query 1 ATGGGTACGTGCATGCAGGAATTAATTGCTGGTGATCAGAATATCGCTGATCAGGAATTG 60
|||| ||||||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1 ATGGATACGTGCATGCAGGAATTAATTGCTGGTGATCAGAATATGGCTGATCAAGACTTT 60
Query 61 CCCTCCGTTATATATAAACATAGTTCTTGTAGTCAAGCTTCTGGACCATGTTGTAGCTAC 120
|||||||||||| | | |||||||||| |||||||||||||||||||||||| ||||||
Sbjct 61 CCCTCCGTTATA-A-A--CATAGTTCTTCTAGTCAAGCTTCTGGACCATGTTGCAGCTAC 116
Query 121 TCAAAACCA 129
|||||||||
Sbjct 117 TCAAAACCA 125
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30090254053
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5