BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901265
Length=1422
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34370.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1869 0.0
> AT2G34370.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr2:14510482-14511891 FORWARD LENGTH=1410
Length=1410
Score = 1869 bits (1012), Expect = 0.0
Identities = 1291/1425 (91%), Gaps = 22/1425 (2%)
Strand=Plus/Plus
Query 1 ATGGTGAGAATAATAATGTGCAGCAGAATTCTCAAATTTTCAAAACCCTACTTTTGGTGT 60
||||||||| || | | |||||| |||||||||||||| ||||||| ||||| ||| ||
Sbjct 1 ATGGTGAGACTAGT--T-TGCAGCCGAATTCTCAAATTTCCAAAACCGTACTTATGGAGT 57
Query 61 GCGACGCAGAGTTCAAGCCGTTGCTTTAATTCACGAGCCCAATCTCATGATCTCATCACA 120
|||||||||| | ||||||||||||| |||||||||||||| |||||| |||||||||||
Sbjct 58 GCGACGCAGACTACAAGCCGTTGCTTCAATTCACGAGCCCAGTCTCATAATCTCATCACA 117
Query 121 AAGACGATCAATTCGTCTCTTCAAGACGTTTTAACACGACCCACTTGGCAAAATCGAAGC 180
|||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 118 AAGACGATCACTTCGTCTCTTCAAGACGTTTTAACACGTCCCATTTGGCAAAATCGAAGC 177
Query 181 TTTGTTCAATGCAGAAGAGTTTCCTCCCATGCTCAGATGGCTT-ATGATCATCAATCTGT 239
|||||||||||||||||||| || ||| |||||||||||| || || |||||||||||||
Sbjct 178 TTTGTTCAATGCAGAAGAGTCTCTTCCTATGCTCAGATGG-TTAATAATCATCAATCTGT 236
Query 240 GACGATTGAGAAATTTGATGCTTTGTGTGAAGAAGTGAAGATAAGAGAAGCCTTGGAAGT 299
||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 237 GACGATTGAGACATTTGATGCTTTGTGTAAACAAGTGAAGATAAGAGAAGCCTTGGAAGT 296
Query 300 TGTTGATATCTTGGAGGATAATGGATATGTAGTGGATTTTCCCAGGATTTTAGGGTTAGC 359
| ||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||
Sbjct 297 TATTGATATCTTGGAGGATAAGGGATATATAGTGGATTTTCCCAGGCTTTTAGGGTTAGC 356
Query 360 GAAACTATGTGGTGAAGTAGAGGCTTTGGAAGAAGCTAGGGTTGTTCATGACTGTATCAC 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 357 GAAACTATGTGGTGAAGTAGAGGCTTTGGAAGAAGCTAGGGTTGTTCATGACTGCATCAC 416
Query 420 TCCTTTAGATGCTAGATCTTACCACACGGTAATCGAAATGTATTCTGGTTGTGGATCCAC 479
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 417 TCCTTTAGATGCTAGATCTTACCACACGGTAATCGAAATGTATTCTGGTTGTCGATCCAC 476
Query 480 TTATGACGCTTTGAAGGTGTTCGACGAAATGCCTGAGAGGAATTCAGAGACTTGGTGCAT 539
| ||||||||||||| |||||| ||||||||||| |||| || |||||||||||| | |
Sbjct 477 TGATGACGCTTTGAATGTGTTCAACGAAATGCCTAAGAGAAACTCAGAGACTTGGGGTAC 536
Query 540 TATGATGAAG-TGCTTAGCGAAGAACGGAGAAGGCGAACGCGCAGTTGATATGTTTACGA 598
||||| ||| |||||||||||||| |||||||| ||||||||| |||||||||| |||
Sbjct 537 AATGAT-AAGGTGCTTAGCGAAGAATGGAGAAGGTGAACGCGCAATTGATATGTTCACGC 595
Query 599 GTTTCAAAGAGGAAGGGAACAAACCCGACAAGGAGATATTCAAAGCGGTTCTCTTTGCGT 658
|||||| |||||||||||| |||||||||||||||||||||||||| ||| |||||||||
Sbjct 596 GTTTCATAGAGGAAGGGAATAAACCCGACAAGGAGATATTCAAAGCTGTTTTCTTTGCGT 655
Query 659 GTGTTTCTCTAGGAGACATTAACGAGGGATTATTGCATTTTGAGTCTATGTACAGAGATT 718
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 656 GTGTTTCGATAGGAGACATTAACGAGGGATTGTTGCATTTTGAGTCTATGTACAGAGATT 715
Query 719 ATGGTATCATTCCTTGTATGGAAGACTATGTGAATGTAACCGAGATGTTAGCAGCTTGTG 778
||||||| ||| || |||||||||||||||||||||| |||||||| ||||||||||
Sbjct 716 ATGGTATGGTTCTTTCAATGGAAGACTATGTGAATGTAATTGAGATGTTGGCAGCTTGTG 775
Query 779 GTCATTTGGATGAGGCATTGGAGTTTGTTGAAAGAATAACGGTGGAACCGAGTGTTGAAA 838
|||||||||||||||| ||||| |||||||| ||||| || |||||||||||||||||||
Sbjct 776 GTCATTTGGATGAGGCGTTGGATTTTGTTGAGAGAATGACTGTGGAACCGAGTGTTGAAA 835
Query 839 TGTGGGAAACACTGATGAATCTTTGTTGGGTTCATGGGG-ATTTAGAGCTAGGGGATAGG 897
|||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||
Sbjct 836 TGTGGGAAACACTGATGAATCTTTGTTGGGTTCA-GGGATATTTAGAGCTTGGGGATAGG 894
Query 898 TTTGCCGAGTTAGTGAAGAAACTAGATGCCTCAAGAATGAACAAAGAGTCAAATGCAGGT 957
||||| |||||| | ||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 895 TTTGCTGAGTTAATAAAGAAGCTAGATGCCTCAAGAATGAGCAAAGAGTCAAATGCAGGT 954
Query 958 CTTGTAGCAGCAAAAGTATCTGACTCTGCAAAGGAGAAACTAAAGGAAATGCGATATTGT 1017
|||||||||||||||| ||| |||||||||| ||||||||||||||| |||||||||||
Sbjct 955 CTTGTAGCAGCAAAAGCATCAGACTCTGCAATGGAGAAACTAAAGGAGTTGCGATATTGT 1014
Query 1018 CAGATGATGAGAGACGACCCAAAATTGCGTAT-C-TGTCAGTTTAGAGCAGGAGATACTT 1075
|||||||| ||||||||||||||| |||||| | || | |||||||||||||||||||
Sbjct 1015 CAGATGATCAGAGACGACCCAAAAAAGCGTATGCATGA-A-TTTAGAGCAGGAGATACTT 1072
Query 1076 CACATCGGAAGAATGACGAAACCGTTGCTGCATTGAGGAGTTTGAAAGTGCAAATGTTAG 1135
|||||| | | | || ||||| ||||||| |||||||||||||||||||||||||
Sbjct 1073 CACATCTG--G---G--GA--CCGTTTCTGCATTCAGGAGTTTGAAAGTGCAAATGTTAG 1123
Query 1136 ATATGGGTTTTTTCCCTGCGACTCGGGTTTGTTTGGAAAAAGTCGAAGAAGAGGAAAAAG 1195
|||| |||||| |||||||||||||||||||||| | || ||| ||||||||||||||||
Sbjct 1124 ATATAGGTTTTGTCCCTGCGACTCGGGTTTGTTTTGTAACAGTGGAAGAAGAGGAAAAAG 1183
Query 1196 AGGAACAACTTCTTTTTAGAAGCAACAAGCTTGCCTTTGCTTACGCGCTCCTTCATTCAA 1255
||||||||||||||||||||||||||||||||||||||||| ||||| || || |||||
Sbjct 1184 AGGAACAACTTCTTTTTAGAAGCAACAAGCTTGCCTTTGCTCACGCGATCATTAATTCAG 1243
Query 1256 AGGCTCGGAAACCATTTACTGTTACACAAGATATGCGAACCTGCATTGATGGCCACAATA 1315
||||||||| |||||| |||||| |||| ||||||||||||| |||||||||||||| |
Sbjct 1244 AGGCTCGGAGACCATTAACTGTTTTACAAAATATGCGAACCTGTATTGATGGCCACAACA 1303
Query 1316 CATTTAAGATGATCTCACTGATCACTGGCAGAGAACTGACACAGCGAGATCAAAAAAGAT 1375
||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||| ||
Sbjct 1304 CATTTAAGATGATCTCACTGATCACCGGCAGAGCACTGATACAGCGAGATAAAAAAAAAT 1363
Query 1376 TTCACCATTACAGAAACGGGGTCTGCTCCTGCCGAGATTACTGGT 1420
||| ||||| ||||||||||||||||||| |||||||||||
Sbjct 1364 ACCACTTTTACAAAAACGGGGTCTGCTCCTGCAAAGATTACTGGT 1408
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70079960820
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5