BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg901267
Length=777
Score E
Sequences producing significant alignments: (Bits) Value
AT2G34390.1 | Symbols: NIP2;1, NLM4 | NOD26-like intrinsic prot... 551 4e-156
AT2G29870.1 | Symbols: | Aquaporin-like superfamily protein | ... 510 6e-144
> AT2G34390.1 | Symbols: NIP2;1, NLM4 | NOD26-like intrinsic protein
2;1 | chr2:14514487-14515915 REVERSE LENGTH=1119
Length=1119
Score = 551 bits (298), Expect = 4e-156
Identities = 406/455 (89%), Gaps = 19/455 (4%)
Strand=Plus/Plus
Query 1 ATGGATGACATATCCGTGAGCAAAAGCAACCATGGAAATGTTGTTGTACTCAACATCGAA 60
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||
Sbjct 123 ATGGATGACATATCAGTGAGCAAAAGCAACCACGGAAATGTTGTTGTGCTCAACATCAAA 182
Query 61 GCTTCCTCTGTTGCAGACA-------------C--CAAATACGAGTCATCATCCTCGCCA 105
|| || ||| ||||||||| | |||| |||||||||| ||| ||||
Sbjct 183 GCGTCTTCTCTTGCAGACACTTCTCTTCCTTCCAACAAACACGAGTCATCGTCCCCGCCT 242
Query 106 TTGATCTCTGTCCATTTCTTGCAAAAGCT-TATGGCGGAACTCGTGGGAACTTATTACT- 163
||| ||||||||||||||||||||||||| | | ||||| ||||| |||||||| || |
Sbjct 243 TTGCTCTCTGTCCATTTCTTGCAAAAGCTCT-TAGCGGAGCTCGTTGGAACTTACTA-TC 300
Query 164 TGATATTCGCGGGTTGTGCTGCTATTGCCGTGAATGCTCAATACAACCATGTCGTGACTC 223
||||||| || || ||||| || |||||||||||||||||| |||||||||| |||||||
Sbjct 301 TGATATTTGCTGGCTGTGCCGCCATTGCCGTGAATGCTCAACACAACCATGTAGTGACTC 360
Query 224 TTGTGGGCATTGCAGTGGTTTGGGGTATAGTGATAATGGTTCTTGTTTACTGTCTCGGCC 283
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TTGTGGGGATTGCTGTGGTTTGGGGTATAGTGATAATGGTTCTTGTTTACTGTCTCGGCC 420
Query 284 ACATCTCTGCACATTTCAATCCTGCTGTCACTCTTGCCTTAGCATCCTCCCAAAGATTCC 343
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 ACCTCTCTGCACATTTCAATCCTGCTGTCACTCTTGCCTTAGCATCTTCCCAAAGATTCC 480
Query 344 CTCTGAATCAAGTCCCGGCTTACATAACTGTTCAAGTCATCGGATCAACCTTGGCCTCTG 403
||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 481 CTCTGAATCAAGTCCCGGCCTACATAACTGTTCAAGTCATCGGATCAACCTTGGCATCTG 540
Query 404 CGACTCTCCGTCTTCTGTTTGATCTGAACAATGAT 438
||||||| |||||||||||||||||||||||||||
Sbjct 541 CGACTCTGCGTCTTCTGTTTGATCTGAACAATGAT 575
Score = 532 bits (288), Expect = 1e-150
Identities = 322/339 (95%), Gaps = 0/339 (0%)
Strand=Plus/Plus
Query 439 TTCATCATTACCGGCTTCCTCATGTTAGTCGTCTGTGCCGTCACAACTACCAAGAAAACT 498
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 651 TTCATCATTACCGGCTTCCTCATGTTAGTCGTCTGTGCCGTCACAACCACCAAGAGAACT 710
Query 499 ACTGAGGAACTAGAGGGGTTAATCATTGGGGCAACCATCACACTGAATGTTATCTTTGCC 558
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||
Sbjct 711 ACAGAGGAACTAGAGGGGCTAATCATTGGGGCAACCGTCACACTGAATGTTATATTTGCT 770
Query 559 GGAGAGGTATCAGGAGCCTCAATGAATCCAGCAAGAAGCATAGGGCCTGCACTGGTGTGG 618
||||||||||||||||| || ||||||||||| ||||||||||| |||||||| ||||||
Sbjct 771 GGAGAGGTATCAGGAGCATCGATGAATCCAGCCAGAAGCATAGGACCTGCACTTGTGTGG 830
Query 619 GGATGTTACAAAGGGATTTGGATATACTTGCTGGCTCCAACACTTGGTGCTGTCTCTGGG 678
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 831 GGATGTTACAAAGGGATTTGGATATACTTGCTGGCTCCAACACTTGGTGCCGTCTCTGGG 890
Query 679 GCCTTGATTCATAAAATGTTACCGGCTATACAGAACGCAGAGTCTGAGTTCTCCAAGACA 738
|||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||
Sbjct 891 GCCTTGATTCATAAAATGTTACCGTCAATACAGAACGCAGAGCCTGAGTTCTCCAAGACA 950
Query 739 GGATCTTCTCATAAACGAGTTACCGATCTTCCTTTGTGA 777
||||||||||||||||||||||||||||||||| |||||
Sbjct 951 GGATCTTCTCATAAACGAGTTACCGATCTTCCTCTGTGA 989
> AT2G29870.1 | Symbols: | Aquaporin-like superfamily protein
| chr2:12741192-12741791 FORWARD LENGTH=420
Length=420
Score = 510 bits (276), Expect = 6e-144
Identities = 319/340 (94%), Gaps = 2/340 (1%)
Strand=Plus/Plus
Query 439 TTCATCATTACCGGCTTCCTCATGTTAGTCGTCTGTGCCGTCACAACTACCAAGAAAACT 498
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 82 TTCATCATTACCGGCTTCCTCATGTTAGTCGTCTGTGCCGTCACAACCACCAAGAGAACT 141
Query 499 ACTGAGGAACTAGAGGGGTTAATCATTGGGGCAACCATCACACTGAATGTTATCTTTGCC 558
|| ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 142 ACAGAGGAACTAGAGGGGCTAATCATTGGGGCAACCGTCACACTGAATGTTATCTTTGTT 201
Query 559 GGAGAGGTATCAGGAGCCTCAATGAATCCAGCAAGAAGCATAGGGCCTGCACTGGTGTGG 618
||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||||
Sbjct 202 GGAGAGGTATCAGGAGCATCGATGAATCCAGCAAGAAGCATAGGACCTGCACTTGTGTGG 261
Query 619 GGATGTTACAAAGGGATTTGGATATACTTGCTGGCTCCAACACTTGGTGCTGTCTCTGGG 678
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 262 GGATGTTACAAAGGGATTTGGATATACTTGCTGGCTCCAACACTTGGTGCCGTCTCTCGG 321
Query 679 GCCTTGATTCATAAAATGTTACCGGCTATAC-AGAACGCAGAGTCTGAGTTCTCCAAGAC 737
|||||||||||||||||||||||| | |||| | ||||||||| || |||||||||||||
Sbjct 322 GCCTTGATTCATAAAATGTTACCGTCAATACCA-AACGCAGAGCCTAAGTTCTCCAAGAC 380
Query 738 AGGATCTTCTCATAAACGAGTTACCGATCTTCCTTTGTGA 777
|||||||||||||||||||||| ||||||||||| |||||
Sbjct 381 AGGATCTTCTCATAAACGAGTTTCCGATCTTCCTCTGTGA 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37776078544
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5